From: Isolation and mutation trend analysis of influenza A virus subtype H9N2 in Egypt
Locus | Name | Primer sequence | Length | Amplicon size (bp) | Primer position | Reference |
---|---|---|---|---|---|---|
H9 | H9-F | CACAATGTMAGYAARTATGC | 20 | 554 | 943-962 | [16] |
 | H9-R | TCCATGCAYTGRTYRTCACA | 20 |  | 1496-1515 | |
H5 | H5-Fb | GAGCAGAATAAAYCATTTTGAGA | 15 | 699 | 392-414 | FLIa |
 | H5-Rb | TGAGTGGATTCTTTGTCTGCAGC | 20 |  | 1167-1189 | |
H7 | H7-F | ATYAAYMSYAGRRCWGTRGG | 20 | 241 | 937-956 | [16] |
 | H7-R | GATCWATTGCHGAYTGRGTG | 20 |  | 1177-1196 | |
N3 | N3-F | AGATCRGGCTTTGAARTCATCAAAGT | 26 | 247 | 1126-1151 | [17] |
 | N3-R | CATTGTCTARTCCACAGAAAGTAACTATAC | 30 |  | 1372-1343 | |
N2 | N2-F | GCATGGTCCAGYTCAAGYTG | 20 | 362 | 548-567 | [17] |
 | N2-R | CCYTTCCAGTTGTCTCTGCA | 20 |  | 909-890 | |
N1 | N1-F | ATGAATCCAAATCAGAAG | 18 | 1350 | 21-38 | [13] |
 | N1-R | TGTCAATGGTGAATGGCAAC | 20 |  | 1346-1365 | |
PB2 | B2-F | TATTCATCRTCAATGATGTGGGA | 23 | 540 | 1591-1613 | [18] |
 | B2- R | GATGCTYAATGCTGGTCCATATC | 23 |  | 2130-2108 | |
PB1 | B1-F | AGCGAGGAGTATCTGTGAGA | 21 | 601 | 774-793 | This study |
 | B1-R | TTCCCTCATGATTCGGTGCA | 20 |  | 1356-1375 | |
PA | PA-F | CCCATGTTCCTGTATGTGAG | 20 | 456 | 1678-1697 | This study |
 | PA-R | GAGGAAGGAGTTGAACCAAG | 20 |  | 2114-2133 | |
NP | NP-Fs | TGCTTGCCTGCTTGTGTGTA | 20 | 665 | 823-842 | [19] |
 | NP-Rs | TACTCCTCTGCATTGTCTCCGA | 22 |  | 1466-1487 | |
M | M-F | CCCTCAAAGCCGAAATCGCGCA | 22 | 875 | 56-77 | This study |
 | M-R | TGCTGTTCCTGCCGATACTCTTCCC | 25 |  | 906-930 | |
NS | NS-F | CACTGTGTCAAGCTTTCAGG | 20 | 798 | 23-42 | [19] |
 | NS-R | TCTCTTGCTCCACTTCAAGC | 20 |  | 786-805 |