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Table 1 BLASTN results for Velvet de novo assembled contigs*

From: Next-generation sequencing of cervical DNA detects human papillomavirus types not detected by commercial kits

HPV type

Number of contigs

Coverage

Region

Genbank accession top hit (Identity; E-value)

39

1

7466.9

Full length

M62849 (99;0.0)

40

1

1391.8

Full length

X74478 (99; 0.0)

16

1

1011.2

Full length

FJ610149 (99;0.0)

56

1

93.9

Full length

EF177179 (99;0.0)

30

2

43.3

5990-3276

X74474 (98; 0.0)

49.2

3249-5302

X74474 (98; 0.0)

  1. *Only contigs representing full or near full length genomes with a top BLASTN hit to HPV sequences are presented.