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Table 2 Oligonucleotide primers used in this study

From: Functional analysis of the interferon-stimulated response element of porcine circovirus type 2 and its role during viral replication in vitro and in vivo

Primer

Primer sequence

Application

PCV2 F1

5′-GCGAATTCAACCTTAACCTTTCTTATTC-3′

PCV2 genome clone

PCV2 R1

5′-ATGAATTCTGGCCCTGCTCCC-3′

PCV2 mF

5′-CAGCGCACTTCTTTg GTa TTg AGATATGACG-3′

ISRE mutation

PCV2 mR

5′-CGTCATATCTc AAt ACc AAAGAAGTGCGCTG-3′

PCV2 F2

5′-CATGGTACCAGAGCGGGGGTTTGA-3′

pGL-355 construction

PCV2 R2

5′-GCTAAGCTTGTTGCTGCTGAGGT-3′

PCV2 F2

5′-CATGGTACCAGAGCGGGGGTTTGA-3′

pGL-270 construction

PCV2 R3

5′-CAGAAGCTTTGACGTATCCAAGAAGGC -3′

PCV2 F3

5′-CCTTCTCCAGCGGTACCGGT-3′

pGL-194 and pGL-194 m construction

PCV2 R2

5′-GCTAAGCTTGTTGCTGCTGAGGT-3′

PCV2 F3

5′-CCTTCTCCAGCGGTACCGGT-3′

pGL-108 construction

PCV2 R3

5′-CAGAAGCTTTGACGTATCCAAGAAGGC -3′

PCV2 F4

5′-CATGGTACCAACGCCTTCTTGGAT-3′

pGL-106 and pGL-106 m construction

PCV2 R2

5′-GCTAAGCTTGTTGCTGCTGAGGT-3′

  1. Mutated nucleotides in the PCV2 ISRE are indicated in lower bald case.