Table 1 Primers used for sequencing reactions
From: Co-circulation of two genotypes of dengue virus serotype 3 in Guangzhou, China, 2009
Primer Name | Locationa | Sequence (5'-3') | Product (bp) |
|---|---|---|---|
F1 | 1-22 | AGTTGTTAGTCTACGTGGACCG | 1054 |
R1 | 1036-1054 | CGTGGGCTTGTTCTTAGCC | |
F2 | 857-877 | GCCCATTACATAGGCACTTCC | 1199 |
R2 | 2036-2055 | CTTTCCCCAAAAGGAGGTTC | |
F3 | 1946-1965 | GAGGATGGACAAGGGAAAGC | 1403 |
R3 | 3326-3348 | CACCATTCGTGTATCAACTTCCC | |
F4 | 3224-3245 | GGAAAATTGGAGCTGGACTTCA | 1001 |
R4 | 4206-4224 | GCCACTAATGGTCCAGCCA | |
F5 | 4112-4131 | CTCAAAAGGAGAAGCTGGCC | 1208 |
R5 | 5299-5319 | CGCATTGTGAACGTTGCGTG | |
F6 | 5252-5274 | GCAACAAAATCTGAACACACAGG | 1071 |
R6 | 6301-6321 | GAATAAGTGCGGGCATCAAGC | |
F7 | 6059-6077 | AAGTCAGCCGCCATAGACG | 1389 |
R7 | 7428-7447 | AGGTGATCCTTCCCAGAGTG | |
F8 | 7032-7049 | AGGCAGTGGTCCTGATGG | 1143 |
R8 | 8153-8174 | GCATTCCTCCATGTTTCCTTTG | |
F9 | 8015-8032 | TCACCAAGCCCAACAGTG | 1528 |
R9 | 9520-9542 | TGGCCATTCTTTTTAACCTCTCC | |
F10 | 9270-9293 | AGCTCACATACCAAAACAAAGTGG | 1060 |
R10 | 10299-10318 | AGCTTCTTCCGTACTGTGGC | |
F11b | 10118-10137 | GGTCTCACTTCCAGAGCAAC | 590 |
R11 | 10674-10696 | AGAACCTGTTGATTCAACAGCAC | |
5'RACE outer primer | 661-678 | TTGCACGTTCCATAGGTC | |
5'RACE inner primer | 267-284 | CTGCTGTTGGTGGAATGG |