Table 5 Mean of the evolutionary divergence from all sequence pairs between genotypes for each genomic region

A)

Genotypes

NT p- distance (%)

ORF

C

prM

E

NS1

NS2A

NS2B

NS3

NS4A

NS4B

NS5

I vs II

6.6

4.1

6.4

7.0

6.7

8.8

6.2

6.9

8.5

5.7

6.0

I vs III

6.8

4.9

5.3

7.3

6.7

8.4

6.0

6.8

8.0

6.5

6.7

II vs III

6.7

4.5

5.6

7.6

6.4

8.5

5.9

6.7

7.7

6.6

6.3

B)

Genotypes

AA p- distance (%)

ORF

C

prM

E

NS1

NS2A

NS2B

NS3

NS4A

NS4B

NS5

I vs II

1.9

2.8

1.8

2.5

2.4

3.4

0.5

1.5

2.8

1.0

1.6

I vs III

2.2

5.3

1.8

3.0

1.6

3.3

1.0

1.2

3.6

1.1

2.3

II vs III

1.9

2.9

1.8

2.3

1.9

3.0

0.7

1.3

3.6

0.8

2.1