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Table 3 Nucleotide and amino acid variations of E2 gene in Delhi samples in comparison with ECSA lineage and other Indian samples are shown here

From: Genetic characterization of Chikungunya virus from New Delhi reveal emergence of a new molecular signature in Indian isolates

Nucleotide Position

Amino acid variation

Samples

ECSA#

Indian Samples

All Delhi Samples

IND-10-DEL10

IND-10-DEL15

8690*

V50A

T

.

.

C

.

8703

 

T

C

C

  

8721

 

T

C/T

C

  

8727

 

T

C/T

C

  

8748

 

C

T/C

T

  

8757

 

T

C/T

C

  

8784

 

C

G/T

G

  

8811

 

A

G

G

  

8814

 

C

T/C

T

  

8859

 

G

A/G

A

  

8865

 

A

G/A

G

  

8910

 

C

T/C

T

  

8952

 

C

T/C

T

  

9031*

A164T

G

A/G

A

  

9081

 

G

A/G

A

  

9138

 

T

C

C

  

9173*

I211T

T

C

C

  

9270

 

G

.

.

A

.

9276

 

C

T

T

  

9285

 

C

T/C

T

  

9332*

V264A

T

T

C

  

9437*

S299N

G

A

A

  

9476*

T312M

C

T/C

T

  

9480

 

C

T

T

  

9489

 

G

A/G

A

  

9525

 

T

C

C

  

9571*

A344T

G

A

A

  

9588

 

C

T/C

T

  

9609

 

C

T

T

  

9610

 

T

C/T

C

  

9615

 

C

T

T

  

9664*

S375T

T

A/T

A

  

9698*

V386A

T

C/T

C

.

C

9706

C389R

T

.

.

  

9741

 

C

T/C

T

  
  1. Asterisk next to nucleotide position denotes non-synonymous mutations. Dot represents same nucleotide as ECSA. Blank represents same nucleotide as All Delhi samples.
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Virology Journal

ISSN: 1743-422X