Primer Name | Sequence 5′-3′ | Genome position | Amplicon size bps | Reference | Where used in study |
---|---|---|---|---|---|
E1-primary-F | ACAAAACCGTCATCCCGTCTC | 10145–11158 | 1013 | [7] | Primary PCR |
E1-primary-R | TGACTATGTGGTCCTTCGGAGG | ||||
E1-F1 | GCTCCGCGTCCTTTACC | 10389–10943 | 555 | [8] | Nested PCR, Phylogenetic analysis |
E1-R1 | ATGGCGACGCCCCCAAAGTC | ||||
E1-gene-F | GCGTACGAACACGTAACA | 9991–11310 | 1320 | This study | Molecular signatures |
E1-gene-R | GTGCCTGCTGAACGACAC | ||||
E2-gene-F | AGCACCAAGGACAACTTCAAT | 8542–9807 | 1266 | This study | Phylogenetic analysis Molecular signatures |
E2-gene-R | TTTAGCTGTTCTGATGCAGC | Â | Â | Â | Â |