Table 1
From: Breaking the 1000-gene barrier for Mimivirus using ultra-deep genome and transcriptome sequencing
Genomic position | Gene | Gene annotation | Codon (SNP position in bold) | Reference allele | Reference allele coverage (%) | Second allele | Second allele coverage (%) | Reference encoded AA | Second allele encoded AA |
|---|---|---|---|---|---|---|---|---|---|
2746 | L1c | Uncharacterized probable non-coding RNA gene | - | C | 86.6 | T | 13.4 | - | - |
5402 | L3 | Uncharacterized protein | G AA | G | 78.0 | A | 22.0 | E | K |
9911 | L6 | Uncharacterized protein | GTA | A | 74.2 | G | 25.8 | V | V |
22248 | R13 | Uncharacterized protein | TAT | T | 83.7 | G | 16.3 | Y | * |
28580 | L18 | Putative sel1-like repeat-containing protein | A TT | A | 76.9 | T | 23.1 | I | F |
47300 | L37 | Putative KilA-N domain-containing protein | A TC | A | 86.3 | G | 13.7 | I | V |
54207 | L42 | Putative ankyrin repeat protein | T TG | A | 63.8 | G | 36.2 | L | V |
97232 | L77b | Uncharacterized protein | - | C | 88.3 | T | 11.7 | A | V |
166952 | R135 | Putative GMC-type oxidoreductase | GAT | T | 87.0 | C | 13.0 | D | D |
322426 | L254 | Heat shock protein 70 homolog | ATT | T | 88.9 | A | 11.1 | I | I |
328586 | R260 | DnaJ-like protein | T TC | T | 81.3 | G | 18.8 | F | V |
329434 | R261 | Uncharacterized protein | CAA | A | 85.7 | C | 14.3 | Q | H |
399891 | R313 | Ribonucleoside-diphosphate reductase large subunit | A TT | A | 83.9 | C | 16.1 | I | L |
440978 | R343 | Probable ribonuclease 3 | T GG | T | 89.9 | A | 10.1 | W | R |
483113 | R367 | Uncharacterized protein | AA A | A | 86.2 | T | 13.8 | K | I |
504876 | - | - | - | T | 88.0 | G | 12.0 | - | - |
601715 | L454 | Uncharacterized protein | AT C | T | 87.3 | C | 12.7 | I | T |
649432 | L485 | Uncharacterized protein | GAA | A | 88.9 | C | 11.1 | E | D |
655506 | L490 | Uncharacterized protein | AC C | G | 85.1 | T | 14.9 | T | I |
734179 | R547 | Uncharacterized protein | A AC | A | 84.7 | C | 15.3 | N | H |
736530 | R549b | Uncharacterized probable non-coding RNA gene | - | T | 88.0 | C | 12.0 | - | - |
787617 | L594 | Uncharacterized protein | AA A | A | 73.5 | C | 26.5 | K | T |
918583 | R699 | Uncharacterized protein | AAA | A | 87.5 | C | 12.5 | K | N |
939044 | R714 | Uncharacterized protein | TT T | T | 69.0 | G | 31.0 | F | C |
962204 | R735 | Uncharacterized protein | CAA | A | 82.3 | C | 17.7 | Q | H |
1069573 | R822 | Uncharacterized protein | A TT | A | 89.2 | G | 10.8 | I | V |
1170156 | R903 | Putative ankyrin repeat protein | TT T | T | 89.1 | G | 10.9 | F | C |