Table 2 Names, Sequences, Sizes and Nucleotide positions of primers designed for HEV genotyping assay
Sr. No. | Name | Sequence (5'-3') | Size (nt.) | Nucleotide Position |
|---|---|---|---|---|
1 | HEL | GGCCACCTCTGGTCTTGTTA | 20 | 5932-5952 |
2 | HER | GCCGTAAGTGGACTGGTCAT | 20 | 6562-6582 |
3 | HNL | GTCTCCCGTTACTCCAGCAC | 20 | 6080-6100 |
4 | HNR | GGTGAGAGAAAGCCAAAGCA | 20 | 6550-6530 |
5 | RfF1 | GCCGAGTATGACCAGTCCA | 19 | 6577-6595 |
6 | RfR1 | ACAACTCCCGAGTTTTACCC | 20 | 7127-7107 |
7 | RfF2 | AATGTTGCGACCGGCGCGC | 19 | 6649-6668 |
8 | RfR2 | TAAGGCGCTGAAGCTCAGC | 19 | 7098-7079 |
9 | OS | AATTATGCCTCAGTACTCGGAGTTG | 25 | 5711-5732 |
10 | OAS | CCCTTAGTCCTTGCTGACGCATTCTC | 26 | 6419-6441 |
11 | IS | GTTAATGCTTCTGCATATCATGGCT | 25 | 5996-6017 |
12 | IAS | AGCCGACGAAATCAATTCTGTC | 22 | 6322-6343 |