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Table 2 HBV genotyping primers sequence

From: Occult HBV infection among Egyptian hepatocellular carcinoma patients

Primer Sequence

a(position, specificity, and polarity)

First PCR

 

P1 5'-TCA CCA TAT TCT TGG GAA CAA GA-3'

(nt 2823-2845, universal, sense)

S1-2 5'-CGA ACC ACT GAA CAA ATG GC-3'

(nt 685-704, universal, antisense)

Second PCR

 

Mix A

 

B2 5'-GGC TCM AGT TCM GGA ACA GT-3'

(nt 67-86, types A to E specific, sense)

BA1R 5'-CTC GCG GAG ATT GAC GAG ATG T-3'

(nt 113-134, type A specific, antisense)

B1R 5'-CAG GTT GGT GAG TGA CTG GAG A-3'

(nt 324-345, type B specific, antisense)

BC1R 5'-GGT CCT AGG AAT CCT GAT GTT G-3'

(nt 165-186, type C specific, antisense)

Mix B

 

BD1 5'-GCC AAC AAG GTA GGA GCT-3'

(nt 2979-2996, type D specific, sense)

BE1 5'-CAC CAG AAA TCC AGA TTG GGA CCA-3'

(nt 2955-2978, type E specific, sense)

BF1 5'-GYT ACG GTC CAG GGT TAC CA-3'

(nt 3032-3051, type F specific, sense)

B2R 5'-GGA GGC GGA TYT GCT GGC AA-3'

(nt 3078-3097, types D to F specific, antisense)

  1. a An "M" represents a nucleotide that could be either an A or a C; a"Y" represents a nucleotide that could be either a C or a T. nt: nucleotide.