Table 1 Homology of E0 gene sequence of different RHDV isolates
From: Isolation and identification of a bovine viral diarrhea virus from sika deer in china
| Â | C24V | R1935 | naqdl | SD-1 | Bega | Y546 | CCSYD | VEDEVAC | ILLC | OSLOSS | ALD | GPE | Brescia | SM | C | LN9912 | JL | BD31 | BDVX818 | C413 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
C24V | Â | 99.5 | 91.5 | 92.7 | 88.4 | 88.6 | 84.9 | 84.6 | 85.6 | 85.2 | 75.5 | 75.4 | 74.5 | 75.5 | 76.0 | 75.8 | 75.2 | 77.1 | 77.0 | 76.6 |
R1935 | 0.6 | Â | 91.5 | 92.7 | 88.6 | 88.9 | 85.2 | 84.8 | 85.8 | 85.2 | 75.5 | 75.4 | 74.6 | 75.5 | 76.0 | 75.8 | 75.3 | 77.1 | 77.0 | 76.5 |
naqdl | 11.8 | 11.8 | Â | 91.5 | 87.7 | 87.8 | 86.2 | 85.5 | 87.0 | 85.6 | 75.6 | 75.8 | 75.2 | 75.3 | 75.1 | 74.8 | 75.1 | 77.8 | 77.5 | 76.9 |
SD-1 | 10.0 | 10.0 | 11.8 | Â | 88.1 | 88.6 | 84.8 | 84.7 | 85.7 | 85.7 | 75.1 | 74.9 | 74.0 | 74.9 | 75.4 | 75.2 | 74.7 | 78.9 | 78.0 | 76.7 |
Bega | 16.9 | 16.5 | 18.0 | 17.4 | Â | 95.1 | 85.8 | 85.8 | 87.4 | 86.4 | 74.8 | 74.9 | 74.9 | 74.9 | 74.5 | 74.5 | 76.3 | 77.7 | 77.6 | 76.9 |
Y546 | 16.6 | 16.2 | 17.9 | 16.5 | 6.5 | Â | 85.5 | 85.4 | 86.7 | 86.5 | 74.5 | 74.6 | 74.7 | 74.4 | 73.9 | 73.9 | 76.2 | 79.1 | 78.2 | 76.3 |
CCSYD | 22.8 | 22.4 | 20.5 | 23.2 | 21.2 | 21.8 | Â | 98.6 | 92.7 | 95.1 | 76.0 | 76.1 | 75.1 | 75.8 | 74.7 | 74.9 | 75.5 | 76.6 | 76.7 | 77.0 |
VEDEVAC | 23.5 | 23.1 | 21.8 | 23.4 | 21.2 | 22.1 | 1.8 | Â | 93.4 | 95.8 | 76.2 | 76.3 | 75.1 | 76.0 | 74.9 | 74.9 | 75.8 | 76.9 | 76.7 | 77.4 |
ILLC | 21.7 | 21.3 | 19.2 | 21.5 | 18.6 | 19.9 | 10.0 | 9.0 | Â | 92.6 | 76.0 | 76.2 | 75.3 | 76.0 | 75.5 | 75.5 | 76.7 | 77.4 | 77.1 | 77.8 |
OSLOSS | 22.6 | 22.6 | 21.6 | 21.5 | 20.2 | 20.0 | 6.5 | 5.5 | 10.3 | Â | 76.1 | 76.2 | 75.2 | 76.0 | 75.2 | 75.2 | 76.1 | 77.3 | 76.6 | 77.1 |
ALD | 40.9 | 40.9 | 40.8 | 42.3 | 42.7 | 43.6 | 40.1 | 39.4 | 39.9 | 39.6 | Â | 99.3 | 94.7 | 98.6 | 96.6 | 96.6 | 88.2 | 79.2 | 79.1 | 77.6 |
GPE | 41.2 | 41.2 | 40.4 | 42.6 | 42.4 | 43.2 | 39.8 | 39.1 | 39.3 | 39.3 | 0.9 | Â | 94.1 | 97.9 | 96.1 | 96.1 | 88.5 | 79.4 | 79.4 | 77.7 |
Brescia | 43.2 | 42.9 | 41.6 | 44.6 | 42.1 | 42.6 | 42.0 | 41.9 | 41.3 | 41.5 | 7.1 | 8.0 | Â | 94.4 | 92.8 | 93.3 | 87.4 | 78.3 | 78.0 | 76.8 |
SM | 40.9 | 40.9 | 41.6 | 42.6 | 42.3 | 43.7 | 40.5 | 39.8 | 39.8 | 39.7 | 1.8 | 2.7 | 7.5 | Â | 96.4 | 96.6 | 88.3 | 79.2 | 79.1 | 77.3 |
C | 39.8 | 39.8 | 42.2 | 41.4 | 43.7 | 45.1 | 43.3 | 42.5 | 41.0 | 41.8 | 4.4 | 5.2 | 9.8 | 4.7 | Â | 99.5 | 86.8 | 78.9 | 78.7 | 77.8 |
LN9912 | 40.3 | 40.3 | 42.7 | 41.9 | 43.6 | 45.1 | 42.6 | 42.5 | 40.9 | 41.7 | 4.4 | 5.2 | 9.2 | 4.4 | 0.6 | Â | 86.8 | 78.9 | 78.7 | 77.6 |
JL | 41.6 | 41.3 | 42.0 | 43.0 | 38.8 | 39.1 | 41.0 | 40.3 | 38.1 | 39.4 | 17.3 | 16.7 | 18.5 | 17.0 | 19.7 | 19.7 | Â | 78.5 | 79.0 | 76.7 |
BD31 | 37.2 | 37.2 | 35.8 | 33.5 | 36.0 | 33.0 | 38.3 | 37.6 | 36.6 | 36.8 | 33.7 | 33.5 | 35.6 | 33.8 | 34.5 | 34.5 | 34.8 | Â | 92.3 | 77.4 |
BDVX818 | 37.4 | 37.4 | 36.5 | 35.4 | 36.3 | 35.0 | 38.1 | 38.2 | 37.2 | 38.5 | 33.9 | 33.4 | 36.4 | 33.9 | 34.9 | 35.0 | 33.9 | 10.6 | Â | 76.7 |
C413 | 38.4 | 38.7 | 37.8 | 38.2 | 37.8 | 39.1 | 37.2 | 36.5 | 35.5 | 36.9 | 36.2 | 35.9 | 37.9 | 37.0 | 35.7 | 36.2 | 37.9 | 36.7 | 38.3 | Â |