Table 1 Summary of the region, name, CDS and length of genes of Chinese BAV-3 HLJ0955 strain and the nucleotide and putative amino acid identities between HLJ0955 and the prototype of BAV-3 WBR-1 strain
Region | Gene | CDS (HLJ0955) | Gene length (bp) | Nucleotide identity with WBR-1 (%) | Amino acid identity with WBR-1 (%) |
|---|---|---|---|---|---|
ITR | ITR | 1-85 | 85 | NDb | ND |
| Â | Â | 34048-34132 | 85 | ND | ND |
E1A | 211R | 560-1169, 1277-1302(join) | 636 | 98.6 | 98.6 |
E1B | 157R | 1395-1868 | 474 | 98.0 | 98.1 |
| Â | 420R | 1769-3031 | 1263 | 96.4 | 97.9 |
pIX | pIX | 3117-3494 | 378 | 94.8 | 97.6 |
IVa2 | IVa2 | 3531-4661(complementa) | 1131 | 96.3 | 98.1 |
E2B | Pol | 4640-7711(complement) | 3072 | 95.9 | 96.6 |
| Â | TP | 7930-9882(complement) | 1953 | 83.9 | 94.8 |
L1 | 52K | 9912-10907 | 996 | 96.3 | 97.9 |
| Â | IIIA | 11022-12737 | 1716 | 93.0 | 96.8 |
| Â | III | 12852-14300 | 1449 | 97.5 | 96.5 |
| Â | pVII | 14363-14878 | 516 | 97.3 | 97.7 |
L2 | pV | 14995-16266 | 1272 | 94.1 | 87.6 |
L3 | pX | 16393-16632 | 240 | 83.6 | 98.8 |
L4 | pVI | 16792-17586 | 795 | 97.8 | 87.5 |
L5 | Hexon | 17733-20459 | 2727 | 80.0 | 94.1 |
| Â | Protease | 20488-21102 | 615 | 95.7 | 98.0 |
E2A | DBP | 21219-22517(complement) | 1299 | 96.1 | 98.4 |
L6 | 100K | 22544-25096 | 2553 | 96.5 | 96.0 |
| Â | 33K | 24729-25553 | 825 | 96.9 | 92.7 |
| Â | pVIII | 25732-26382 | 651 | 97.2 | 97.2 |
E3 | 284R | 26441-27295 | 855 | 95.3 | 90.9 |
| Â | 121R | 27306-27671 | 366 | 97.0 | 97.5 |
L7 | Fiber | 27898-30828 | 2931 | 93.4 | 92.7 |
E4 | ORF5 | 30906-31565(complement) | 660 | 97.4 | 97.3 |
| Â | ORF4 | 31504-31935(complement) | 432 | 96.0 | 93.1 |
| Â | ORF3 | 31957-32763(complement) | 807 | 96.3 | 97.0 |
| Â | ORF2 | 33028-33237(complement) | 210 | 95.7 | 95.7 |
| Â | ORF1 | 33250-33675(complement) | 426 | 91.7 | 90.8 |