Table 4 Synonymous codon usage of the whole coding sequence in RHDV

Ala

GCA

1.238761

0.877698

Leu

CUA

0.582651

0.410596

GCC

1.224431

1.165468

CUC

1.349825

0.397351

GCG

0.567437

0.014388

CUG

1.188367

0.900662

GCU

0.969371

1.942446

CUU

1.107137

0.821192

Arg

AGA

1.266604

1.481013

UUA

0.498412

1.350993

AGG

2.026193

3.341772

UUG

1.273609

2.119205

CGA

0.303087

0

Lys

AAA

0.699282

0.837209

CGC

0.991581

1.177215

AAG

1.300718

1.162791

CGG

0.445276

0

Phe

UUC

0.909962

0.360902

CGU

0.967259

0

UUU

1.090038

1.639098

Asn

AAC

1.562517

0.140845

Pro

CCA

1.370342

2

AAU

0.437483

1.859155

CCC

1.204832

0.451613

Asp

GAC

1.576108

0.909091

CCG

0.45541

0

GAU

0.423892

1.090909

CCU

0.969417

1.548387

Cys

UGC

1.034803

0

Ser

AGC

0.969041

1.567416

UGU

0.965197

0

AGU

1.104135

3.370787

Gln

CAA

0.798416

1.651613

UCA

1.437974

0

CAG

1.201584

0.348387

UCC

1.226239

0.522472

Glu

GAA

0.843523

0.8

UCG

0.558562

0

GAG

1.156477

1.2

UCU

0.704048

0.539326

Gly

GGA

0.669081

0.797508

Ile

AUA

0.574538

0

GGC

1.262976

0.984424

AUC

1.247451

0.525

GGG

0.944991

0.398754

AUU

1.17801

2.475

GGU

1.122952

1.819315

Tyr

UAC

1.285714

0.086022

His

CAC

1.412429

0

UAU

0.714286

1.913978

CAU

0.587571

2

Val

GUA

0.316211

0.763077

Thr

ACA

1.212516

0.129032

GUC

1.050408

0.258462

ACC

1.379635

2

GUG

1.163066

0.615385

ACG

0.496292

0

GUU

1.470315

2.363077

ACU

0.911557

1.870968