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Table 4 Synonymous codon usage of the whole coding sequence in RHDV

From: Bioinformatics analysis of rabbit haemorrhagic disease virus genome

AAa Codon RSCU in ORF1 RSCU in ORF2 AAa Codon RSCU in ORF1 RSCU in ORF2
Ala GCA 1.238761 0.877698 Leu CUA 0.582651 0.410596
  GCC 1.224431 1.165468   CUC 1.349825 0.397351
  GCG 0.567437 0.014388   CUG 1.188367 0.900662
  GCU 0.969371 1.942446   CUU 1.107137 0.821192
Arg AGA 1.266604 1.481013   UUA 0.498412 1.350993
  AGG 2.026193 3.341772   UUG 1.273609 2.119205
  CGA 0.303087 0 Lys AAA 0.699282 0.837209
  CGC 0.991581 1.177215   AAG 1.300718 1.162791
  CGG 0.445276 0 Phe UUC 0.909962 0.360902
  CGU 0.967259 0   UUU 1.090038 1.639098
Asn AAC 1.562517 0.140845 Pro CCA 1.370342 2
  AAU 0.437483 1.859155   CCC 1.204832 0.451613
Asp GAC 1.576108 0.909091   CCG 0.45541 0
  GAU 0.423892 1.090909   CCU 0.969417 1.548387
Cys UGC 1.034803 0 Ser AGC 0.969041 1.567416
  UGU 0.965197 0   AGU 1.104135 3.370787
Gln CAA 0.798416 1.651613   UCA 1.437974 0
  CAG 1.201584 0.348387   UCC 1.226239 0.522472
Glu GAA 0.843523 0.8   UCG 0.558562 0
  GAG 1.156477 1.2   UCU 0.704048 0.539326
Gly GGA 0.669081 0.797508 Ile AUA 0.574538 0
  GGC 1.262976 0.984424   AUC 1.247451 0.525
  GGG 0.944991 0.398754   AUU 1.17801 2.475
  GGU 1.122952 1.819315 Tyr UAC 1.285714 0.086022
His CAC 1.412429 0   UAU 0.714286 1.913978
  CAU 0.587571 2 Val GUA 0.316211 0.763077
Thr ACA 1.212516 0.129032   GUC 1.050408 0.258462
  ACC 1.379635 2   GUG 1.163066 0.615385
  ACG 0.496292 0   GUU 1.470315 2.363077
  ACU 0.911557 1.870968