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Table 1 Primers used in this study for amplification of the full-length genome of SX09S-01 strain.

From: Isolation and molecular characterization of genotype 1 Japanese encephalitis virus, SX09S-01, from pigs in China

Segments

Primers

Oligonucleotide sequence (5'-3')

Positiona

Length (bp)

Annealing temperature (°C)

S1

P1Sb

5'--- AGAAGTTTATCTGTGTGGACTTC---3'

1-23

1795

58

 

P1Rc

5'--- CCACCACGATGGCTCCTGC---3'

1777-1795

  

S2

P2S

5'--- TGYTGGTCGCTCCGGCTTA---3'

956-974

1582

57

 

P2R

5'--- AAGATGCCACTTCCACAYCTC ---3'

2517-2537

  

S3

P3S

5'--- GACACTGGATGTGCCATTG---3'

2479-2497

2310

57

 

P3R

5'---TCTTTTTGTTGTTTTTAAAG---3'

4589-4608

  

S4

P4S

5'--- GTTGGACGACGACGGCGACTTTC---3'

4449-4471

2648

58

 

P4R

5'--- AGGTGATTAGGTGCTTCAGGAGAGG---3'

7072-7096

  

S5

P5S

5'--- GGTCGGAGTGGTGGCAGCAAATG---3'

6894-6916

2200

58

 

P5R

5'--- CCCTTTAGCCTTTCCGAACTCTCCG---3'

9069-9093

  

S6

P6S

5'--- AGGAGTCAAGGAAGTGCTCAACG---3'

8787-8809

2178

58

 

P6R

5'--- AGATCCTGTGTTCTTCCTCACCACC ---3'

10940-10964

  
  1. a Numbers indicate the location of the nucleotide sequence of XJ69
  2. b S represents the sense primer.
  3. c R represents the anti-sense primer