Table 3 Percentage similarity between the gene segments of Tunisian isolates with those of reference viruses
Identity (%)a | |||||||||
|---|---|---|---|---|---|---|---|---|---|
Tunisian isolates | Gene | AV/SA/06 | CK/Em/R66/02 | CK/Du/338/01 | CK/Du/383/01 | CK/Pak/UDL01/08 | qu/HK/G1/97 | qu/HK/Y280/97 | Ck/HK/G9/97 |
| Â | HA | 96.83 | 92.45 | 92.91 | 92.73 | 95.62 | 93.66 | 88.81 | 89.65 |
| Â | NA | 92.00 | 97.00 | 97.26 | 97.01 | 94.00 | 95.00 | 93.53 | 92.53 |
A/CK/TUN/12/10 | PB2 | 95.72 | 93.86 | 96.46 | 96.46 | 96.83 | 96.83 | 96.83 | 86.05 |
| Â | NP | 98.2 | 97. 30 | 97.6 | 97.6 | 92 | 85.87 | 85.5 | 90.71 |
| Â | M | 98.46 | 95.71 | 95.23 | 95.23 | 97.18 | 95.71 | 93 | 93.13 |
| Â | NS | 97.77 | 96.53 | 96.16 | 96.61 | 94.00 | 90.72 | 96.83 | 90.6 |
| Â | HA | 96.74 | 92.63 | 92.82 | 92.63 | 95.52 | 93.56 | 88.72 | 96.83 |
| Â | NA | 92.00 | 97.26 | 97.26 | 97.26 | 94.00 | 95.27 | 93.78 | 96.83 |
A/MB/TUN/51/10 | PB2 | 95.72 | 93.86 | 96.46 | 96.46 | 92.00 | 85.87 | 85.50 | 96.83 |
| Â | NP | 97.90 | 97.70 | 97.90 | 97.90 | 94.91 | 97.30 | Â | 96.83 |
| Â | M | 98.46 | 95.71 | 95.22 | 95.23 | 97.18 | 96.83 | 93.00 | 96.83 |