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Table 3 APMV6/mallard/Belgium/12245/07 genome organization and characterization (genome size 16236 nt)

From: Identification and complete genome sequencing of paramyxoviruses in mallard ducks (Anas platyrhynchos) using random access amplification and next generation sequencing technologies

Gene

Genome position**

5'UTR (nt) (incl. gene-start)

ORF

3'UTR(nt) (incl. gene-end)

Intergenic region (nt)

Deduced protein size (aa)

NP

56-1626

72

1398

101

7

465

P (V; W)*

1634-3119

53

1293

(807; 534)

140

2

430

(268; 177)

M

3122-4526

113

1101

191

59

366

F

4586-6420

12

1668

155

49

555

SH

6470-7043

72

429

73

28

142

HN

7072-9102

50

1842

139

63

613

L

9166-16182

112

6726

179

 

2241

  1. *putative RNA editing site at position 2148-2156 (5'-AAAAAAGGG-3')
  2. **The indicated position is relative to the position of the used reference APMV6/Goose/FarEast/4440/2003 [GenBank:EF569970]
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Virology Journal

ISSN: 1743-422X