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Table 2 Nucleotide sequence similarity and divergence of the complete E gene from ROK mosquito pools

From: Emergence of Japanese encephalitis virus genotype V in the Republic of Korea

  A10.825 A10.881 A8.789 JE_USAMRIID K01-JN K05-GS FU Nakayama JKT6468 10-1827 Muar
A10.825 (1)   99.4 99.3 94.3 98.2 99.3 89.0 87.8 81.8 77.2 76.8
A10.881 (1) 0.6   99.3 94.1 98.1 99.2 89.0 88.0 82.2 77.4 76.5
A8.789 (1) 0.7 0.7   94.3 98.2 99.3 89.1 87.8 82.1 77.2 76.4
JE_USAMRIID (1) 6.0 6.3 6.0   94.1 94.3 88.0 86.6 82.1 77.2 76.6
K01-JN (1) 1.8 1.9 1.8 6.2   98.3 89.1 87.6 81.8 77.3 76.8
K05-GS (1) 0.7 0.8 0.7 6.0 1.8   89.4 88.0 81.8 77.4 76.6
FU (2) 12.2 12.2 12.1 13.6 12.2 11.7   88.1 81.9 78.1 77.0
Nakayama (3) 13.8 13.5 13.7 15.3 14.1 13.6 13.3   83.0 77.7 77.5
JKT6468 (4) 21.8 21.1 21.3 21.3 21.7 21.7 21.5 20.1   77.8 77.1
10-1827 (5) 27.6 27.4 27.7 27.6 27.5 27.3 26.3 26.9 26.8   90.0
Muar (5) 28.2 28.6 28.7 28.4 28.1 28.5 27.9 27.2 27.7 11.1  
  1. The upper triangle represents similarity while the lower triangle represents divergence. A8.789, A10.825, A10.881, and 10-1827 represent the ROK mosquito pools. JEV reference strains are shown for 5 genotypes: I (K01-JN, K05-GS), II (FU), III (Nakayama), IV (JKT6468), and V (Muar). Percent similarity/divergence was computed using the MegAlign program (Lasergene v.8 software, USA). Numbers in parentheses represent the JEV genotype.