TY - JOUR AU - Zheng, Z. M. AU - Baker, C. C. PY - 2006 DA - 2006// TI - Papillomavirus genome structure, expression, and post-transcriptional regulation JO - Front Biosci VL - 11 UR - https://doi.org/10.2741/1971 DO - 10.2741/1971 ID - Zheng2006 ER - TY - JOUR AU - Day, P. M. AU - Lowy, D. R. AU - Schiller, J. T. PY - 2003 DA - 2003// TI - Papillomaviruses infect cells via a clathrin-dependent pathway JO - Virology VL - 307 UR - https://doi.org/10.1016/S0042-6822(02)00143-5 DO - 10.1016/S0042-6822(02)00143-5 ID - Day2003 ER - TY - CHAP AU - Bosch, F. X. AU - Sanjose, S. AU - Castellsague, X. AU - Moreno, V. AU - Munoz, N. ED - Saveria Campo, M. PY - 2006 DA - 2006// BT - Papillomavirus Research: From Natural History to Vaccines and Beyond PB - Caisreir Academic Press CY - Wymondham ID - Bosch2006 ER - TY - JOUR AU - Clifford, G. M. AU - Smith, J. S. AU - Plummer, M. AU - Munoz, N. AU - Franceschi, S. PY - 2003 DA - 2003// TI - Human papillomavirus types in invasive cervical cancer worldwide: a meta-analysis JO - Br J Cancer VL - 88 UR - https://doi.org/10.1038/sj.bjc.6600688 DO - 10.1038/sj.bjc.6600688 ID - Clifford2003 ER - TY - JOUR AU - Munoz, N. AU - Bosch, F. X. AU - de Sanjose, S. AU - Herrero, R. AU - Castellsague, X. AU - Shah, K. V. AU - Snijders, P. J. AU - Meijer, C. J. PY - 2003 DA - 2003// TI - Epidemiologic classification of human papillomavirus types associated with cervical cancer JO - N Engl J Med VL - 348 UR - https://doi.org/10.1056/NEJMoa021641 DO - 10.1056/NEJMoa021641 ID - Munoz2003 ER - TY - JOUR AU - D'Souza, G. AU - Kreimer, A. R. AU - Viscidi, R. AU - Pawlita, M. AU - Fakhry, C. AU - Koch, W. M. AU - Westra, W. H. AU - Gillison, M. L. PY - 2007 DA - 2007// TI - Case-Control Study of Human Papillomavirus and Oropharyngeal Cancer JO - N Engl J Med VL - 356 UR - https://doi.org/10.1056/NEJMoa065497 DO - 10.1056/NEJMoa065497 ID - D'Souza2007 ER - TY - JOUR AU - de Villiers, E. -. M. AU - Fauquet, C. AU - Broker, T. R. AU - Bernard, H. -. U. AU - zur Hausen, H. PY - 2004 DA - 2004// TI - Classification of papillomaviruses JO - Virology VL - 324 UR - https://doi.org/10.1016/j.virol.2004.03.033 DO - 10.1016/j.virol.2004.03.033 ID - de Villiers2004 ER - TY - JOUR AU - Hegde, R. S. PY - 2002 DA - 2002// TI - The papillomavirus E2 proteins: structure, function, and biology JO - Annu Rev Biophys Biomol Struct VL - 31 UR - https://doi.org/10.1146/annurev.biophys.31.100901.142129 DO - 10.1146/annurev.biophys.31.100901.142129 ID - Hegde2002 ER - TY - JOUR AU - de Villiers, E. M. AU - Fauquet, C. AU - Broker, T. R. AU - Bernard, H. U. AU - zur Hausen, H. PY - 2004 DA - 2004// TI - Classification of papillomaviruses JO - Virology VL - 324 UR - https://doi.org/10.1016/j.virol.2004.03.033 DO - 10.1016/j.virol.2004.03.033 ID - de Villiers2004 ER - TY - JOUR AU - Wentzensen, N. AU - Vinokurova, S. AU - von Knebel Doeberitz, M. PY - 2004 DA - 2004// TI - Systematic review of genomic integration sites of human papillomavirus genomes in epithelial dysplasia and invasive cancer of the female lower genital tract JO - Cancer Res VL - 64 UR - https://doi.org/10.1158/0008-5472.CAN-04-0009 DO - 10.1158/0008-5472.CAN-04-0009 ID - Wentzensen2004 ER - TY - JOUR AU - McBride, A. A. AU - Romanczuk, H. AU - Howley, P. M. PY - 1991 DA - 1991// TI - The papillomavirus E2 regulatory proteins JO - J Biol Chem VL - 266 ID - McBride1991 ER - TY - JOUR AU - Sakai, H. AU - Yasugi, T. AU - Benson, J. D. AU - Dowhanick, J. J. AU - Howley, P. M. PY - 1996 DA - 1996// TI - Targeted mutagenesis of the human papillomavirus type 16 E2 transactivation domain reveals separable transcriptional activation and DNA replication functions JO - J Virol VL - 70 ID - Sakai1996 ER - TY - JOUR AU - Antson, A. A. AU - Burns, J. E. AU - Moroz, O. V. AU - Scott, D. J. AU - Sanders, C. M. AU - Bronstein, I. B. AU - Dodson, G. G. AU - Wilson, K. S. AU - Maitland, N. J. PY - 2000 DA - 2000// TI - Structure of the intact transactivation domain of the human papillomavirus E2 protein JO - Nature VL - 403 UR - https://doi.org/10.1038/35001638 DO - 10.1038/35001638 ID - Antson2000 ER - TY - JOUR AU - Thain, A. AU - Jenkins, O. AU - Clarke, A. AU - Gaston, K. PY - 1996 DA - 1996// TI - CpG methylation directly inhibits binding of the human papillomavirus type 16 E2 protein to specific DNA sequences JO - J Virol VL - 70 ID - Thain1996 ER - TY - CHAP AU - Ferriero, D. U. AU - Delarole, M. AU - Nadra, A. D. AU - De Prat Gay, G. PY - 2005 DA - 2005// TI - Free Energy Contributions to Direct Readout of a DNA Sequence BT - J Biol Chem ID - Ferriero2005 ER - TY - JOUR AU - Blakaj, D. M. AU - Kattamuri, C. AU - Khrapunov, S. AU - Hegde, R. S. AU - Brenowitz, M. PY - 2006 DA - 2006// TI - Indirect Readout of DNA Sequence by Papillomavirus E2 Proteins Depends Upon Net Cation Uptake JO - J Mol Biol VL - 358 UR - https://doi.org/10.1016/j.jmb.2006.01.093 DO - 10.1016/j.jmb.2006.01.093 ID - Blakaj2006 ER - TY - JOUR AU - Dell, G. AU - Wilkinson, K. W. AU - Tranter, R. AU - Parish, J. AU - Leo Brady, R. AU - Gaston, K. PY - 2003 DA - 2003// TI - Comparison of the Structure and DNA-binding Properties of the E2 Proteins from an Oncogenic and a Non-oncogenic Human Papillomavirus JO - J Mol Biol VL - 334 UR - https://doi.org/10.1016/j.jmb.2003.10.009 DO - 10.1016/j.jmb.2003.10.009 ID - Dell2003 ER - TY - JOUR AU - Hines, C. S. AU - Meghoo, C. AU - Shetty, S. AU - Biburger, M. AU - Brenowitz, M. AU - Hegde, R. S. PY - 1998 DA - 1998// TI - DNA structure and flexibility in the sequence-specific binding of papillomavirus E2 proteins JO - J Mol Biol VL - 276 UR - https://doi.org/10.1006/jmbi.1997.1578 DO - 10.1006/jmbi.1997.1578 ID - Hines1998 ER - TY - CHAP AU - Li, R. AU - Knight, J. AU - Bream, G. AU - Stenlund, A. AU - Botchan, M. PY - 1989 DA - 1989// TI - Specific recognition nucleotides and their DNA context determine the affinity of E2 protein for 17 binding sites in the BPV-1 genome BT - Genes & Development ID - Li1989 ER - TY - JOUR AU - Sanchez, I. E. AU - Dellarole, M. AU - Gaston, K. AU - de Prat Gay, G. PY - 2008 DA - 2008// TI - Comprehensive comparison of the interaction of the E2 master regulator with its cognate target DNA sites in 73 human papillomavirus types by sequence statistics JO - Nucl Acids Res VL - 36 UR - https://doi.org/10.1093/nar/gkm1104 DO - 10.1093/nar/gkm1104 ID - Sanchez2008 ER - TY - JOUR AU - Yongli, Z. h. a. n. g. AU - Zhiqun, X. i. AU - Rashmi S, H. e. g. d. e. AU - Zippora, S. h. a. k. k. e. d. AU - Crothers, a. D. M. PY - 2004 DA - 2004// TI - Predicting indirect readout effects in protein-DNA interactions JO - PNAS VL - 101 UR - https://doi.org/10.1073/pnas.0402319101 DO - 10.1073/pnas.0402319101 ID - Yongli2004 ER - TY - JOUR AU - M Remm, R. B. AU - Jenkins, J. R. PY - 1992 DA - 1992// TI - The E2 binding sites determine the efficiency of replication for the origin of human papillomavirus type 18 JO - Nucleic Acids Res VL - 20 UR - https://doi.org/10.1093/nar/20.22.6015 DO - 10.1093/nar/20.22.6015 ID - M Remm1992 ER - TY - JOUR PY - 1997 DA - 1997// TI - Dose-dependent regulation of the early promoter of human papillomavirus type 18 by the viral E2 protein JO - J Virol VL - 71 ID - ref23 ER - TY - JOUR AU - Ensser, A. AU - Pfister, H. PY - 1990 DA - 1990// TI - Epidermodysplasia verruciformis associated human papilomaviruses present a subgenus-specific organization of the regulatory genome region JO - Nucl Acids Res VL - 18 UR - https://doi.org/10.1093/nar/18.13.3919 DO - 10.1093/nar/18.13.3919 ID - Ensser1990 ER - TY - JOUR AU - Piirsoo, M. AU - Ustav, E. AU - Mandel, T. AU - Stenlund, A. AU - Ustav, M. PY - 1996 DA - 1996// TI - Cis and trans requirements for stable episomal maintenance of the BPV-1 replicator JO - Embo J VL - 15 ID - Piirsoo1996 ER - TY - JOUR AU - Stubenrauch, F. AU - Lim, H. B. AU - Laimins, L. A. PY - 1998 DA - 1998// TI - Differential requirements for conserved E2 binding sites in the life cycle of oncogenic human papillomavirus type 31 JO - J Virol VL - 72 ID - Stubenrauch1998 ER - TY - JOUR AU - Sverdrup, F. AU - Khan, S. A. PY - 1995 DA - 1995// TI - Two E2 binding sites alone are sufficient to function as the minimal origin of replication of human papillomavirus type 18 DNA JO - J Virol VL - 69 ID - Sverdrup1995 ER - TY - JOUR AU - Li, R. AU - Knight, J. AU - Bream, G. AU - Stenlund, A. AU - Botchan, M. PY - 1989 DA - 1989// TI - Specific recognition nucleotides and their DNA context determine the affinity of E2 protein for 17 binding sites in the BPV-1 genome JO - Genes & Development VL - 3 UR - https://doi.org/10.1101/gad.3.4.510 DO - 10.1101/gad.3.4.510 ID - Li1989 ER - TY - CHAP AU - Bailey, T. L. AU - Elkan, C. PY - 1994 DA - 1994// TI - Fitting a mixture model by expectation maximization to discover motifs in biopolymers BT - Proceedings of the Second International Conference on Intelligent Systems for Molecular Biology PB - AAAI Press CY - Menlo Park, California ID - Bailey1994 ER - TY - STD TI - Chapter 17, The Reference Sequence (RefSeq) Project In The NCBI handbook. Bethesda: National Library of Medicine (US), National Center for Biotechnology Information; 2002. ID - ref30 ER - TY - JOUR AU - Olson M, H. L. AU - Cantor, C. AU - Botstein, D. PY - 1989 DA - 1989// TI - A common language for physical mapping of the human genome JO - Science VL - 245 UR - https://doi.org/10.1126/science.2781285 DO - 10.1126/science.2781285 ID - Olson M1989 ER - TY - JOUR AU - Pruitt, K. D. T. AU - T Maglott, D. R. PY - 2007 DA - 2007// TI - NCBI Reference Sequence (RefSeq): a curated non-redundant sequence database of genomes, transcripts and proteins JO - Nucleic Acids Res VL - 35 UR - https://doi.org/10.1093/nar/gkl842 DO - 10.1093/nar/gkl842 ID - Pruitt2007 ER - TY - JOUR AU - Bailey, T. L. AU - Gribskov, M. PY - 1998 DA - 1998// TI - Combining evidence using p-values: application to sequence homology searches JO - Bioinformatics VL - 14 UR - https://doi.org/10.1093/bioinformatics/14.1.48 DO - 10.1093/bioinformatics/14.1.48 ID - Bailey1998 ER - TY - JOUR AU - Edgar, R. C. PY - 2004 DA - 2004// TI - MUSCLE: multiple sequence alignment with high accuracy and high throughput JO - Nucleic Acids Res VL - 32 UR - https://doi.org/10.1093/nar/gkh340 DO - 10.1093/nar/gkh340 ID - Edgar2004 ER - TY - JOUR AU - Papadopoulos, J. S. AU - Agarwala, R. PY - 2007 DA - 2007// TI - COBALT: constraint-based alignment tool for multiple protein sequences JO - Bioinformatics VL - 23 UR - https://doi.org/10.1093/bioinformatics/btm076 DO - 10.1093/bioinformatics/btm076 ID - Papadopoulos2007 ER - TY - JOUR AU - Narechania, A. AU - Terai, M. AU - Burk, R. D. PY - 2005 DA - 2005// TI - Overlapping reading frames in closely related human papillomaviruses result in modular rates of selection within E2 JO - J Gen Virol VL - 86 UR - https://doi.org/10.1099/vir.0.80747-0 DO - 10.1099/vir.0.80747-0 ID - Narechania2005 ER - TY - JOUR AU - Strauss, J. K. AU - Maher, L. J. PY - 1994 DA - 1994// TI - DNA bending by asymmetric phosphate neutralization JO - Science VL - 266 UR - https://doi.org/10.1126/science.7997878 DO - 10.1126/science.7997878 ID - Strauss1994 ER - TY - JOUR AU - Kerppola, T. K. AU - Curran, T. PY - 1997 DA - 1997// TI - The transcription activation domains of Fos and Jun induce DNA bending through electrostatic interactions JO - Embo J VL - 16 UR - https://doi.org/10.1093/emboj/16.10.2907 DO - 10.1093/emboj/16.10.2907 ID - Kerppola1997 ER - TY - JOUR AU - Li, R. AU - Knight, J. AU - Bream, G. AU - Stenlund, A. AU - Botchan, M. PY - 1989 DA - 1989// TI - Specific recognition nucleotides and their DNA context determine the affinity of E2 protein for 17 binding sites in the BPV-1 genome JO - Genes Dev VL - 3 UR - https://doi.org/10.1101/gad.3.4.510 DO - 10.1101/gad.3.4.510 ID - Li1989 ER - TY - JOUR AU - Mistry, N. AU - Simonsson, M. AU - Evander, M. PY - 2007 DA - 2007// TI - Transcriptional activation of the human papillomavirus type 5 and 16 long control region in cells from cutaneous and mucosal origin JO - Virol J VL - 4 UR - https://doi.org/10.1186/1743-422X-4-27 DO - 10.1186/1743-422X-4-27 ID - Mistry2007 ER - TY - JOUR AU - Sailaja, G. AU - Watts, R. M. AU - Bernard, H. U. PY - 1999 DA - 1999// TI - Many different papillomaviruses have low transcriptional activity in spite of strong epithelial specific enhancers JO - J Gen Virol VL - 80 UR - https://doi.org/10.1099/0022-1317-80-7-1715 DO - 10.1099/0022-1317-80-7-1715 ID - Sailaja1999 ER - TY - JOUR AU - McPhillips, M. G. AU - Oliveira, J. G. AU - Spindler, J. E. AU - Mitra, R. AU - McBride, A. A. PY - 2006 DA - 2006// TI - Brd4 Is Required for E2-Mediated Transcriptional Activation but Not Genome Partitioning of All Papillomaviruses JO - J Virol VL - 80 UR - https://doi.org/10.1128/JVI.01105-06 DO - 10.1128/JVI.01105-06 ID - McPhillips2006 ER -