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Table 1 List of cDNAs up-regulated during PDH infection with DHBV

From: Differential gene expression analysis of in vitro duck hepatitis B virus infected primary duck hepatocyte cultures

No. Name of the clone Abundance Ratio BLAST Result BLAST/tBLASTx Amplicon Size (bp) e-value GenBank Accession No.
1 F22 2.41 Cadherin 11, type 2, OB-cadherin (osteoblast) (CDH11)-Gallus gallus BLAST 462 0 JG662697
2 F125 2.23 Pyruvate dehydrogenase E1-beta subunit variant 3-like-Taeniopygia guttata BLAST 268 2.00E-85 JG662698
3 F106 2.08 Anas platyrhynchos female-specific sequence tBLASTx 371 3.00E-04 JG662699
4 F8 2.04 Similar to SH3 domain containing 19-Taeniopygia guttata tBLASTx 678 4.00E-07 JG662700
5 F71 2 Ubiquitin-like, containing PHD and RING finger domains, 1 (UHRF1)-Gallus gallus BLAST 593 0 JG662701
6 F21 1.87 Zinc finger CCCH-type containing 13 (ZC3H13)-Gallus gallus BLAST 681 0 JG662702
7 F13 1.77 Succinate-CoA ligase, GDP-forming, alpha subunit(SUCLG1)-Gallus gallus BLAST 767 0 JG662703
8 F76 1.76 ElaC homolog 2 (E. coli) (ELAC2)-Gallus gallus tBLASTx 218 1.00E-14 JG662704
9 F19 1.58 CWC22 spliceosome-associated protein homolog-Taeniopygia guttata BLAST 680 0 JG662705
10 F70 1.55 Similar to KIAA2019 protein/AHNAK nucleoprotein 2-Gallus gallus BLAST 544 1.00E-150 JG662706
11 F46 1.51 Filamin B, beta-Gallus gallus BLAST 655 1.00E-140 JG662707
12 F77 1.45 Tumor necrosis factor receptor superfamily,member 6b, decoy (TNFRSF6B)-Gallus gallus tBLASTx 527 5.00E-07 JG662708
13 F131 1.44 Nuclear protein Matrin 3 (MATR3)-Gallus gallus BLAST 448 0 JG662709
14 F45 1.42 Heat shock transcription factor 2 (HSF2)-Gallus gallus BLAST 755 0 JG662710
15 F74 1.42 High mobility group AT-hook 2 (HMGA2)-Gallus gallus BLAST 209 2.00E-49 JG662711
16 F6 1.4 CLE7-Gallus gallus BLAST 541 0 JG662712
17 F16 1.35 Cu/Zn superoxide dismutase (SOD1)-Melopsittacus undulatus BLAST 346 8.00E-31 JG662713
18 F43 1.33 Exonuclease NEF-sp-Gallus gallus BLAST 680 9.00E-143 JG662714
19 F26 1.32 Component of oligomeric golgi complex 3 (COG3)-Bos taurus tBLASTx 308 0.002 JG662715
20 F42 1.31 CD9 protein-Anas platyrhynchos BLAST 748 0 JG662716
21 F127 1.31 Junco hyemalis 164 gene, partial sequence tBLASTx 234 5.00E-16 JG662717
22 F17 1.29 Quaking homolog, KH domain-Taeniopygia guttata BLAST 678 0 JG662718
23 F44 1.29 Alanine-glyoxylate aminotransferase 2-Gallus gallus tBLASTx 721 5.00E-21 JG662719
24 F135 1.27 Leucine-rich repeats and calponin homology (CH) domain containing 4-Oryctolagus cuniculus tBLASTx 288 0.4 JG662720
25 F14 1.24 Clathrin, light chain A (CLTA)-Gallus gallus BLAST 673 0 JG662721
26 F83 1.2 Sequestosome 1-Gallus gallus BLAST 562 0 JG662722
27 F10 1.18 RAB 32, member of Ras oncogene-Gallus gallus BLAST 743 0 JG662723
28 F30 1.16 Ribosomal protein L6 (RPL6)-Gallus gallus BLAST 591 0 JG662724
29 F64 1.16 Holocytochrome c synthase (cytochrome c heme-lyase)-Gallus gallus tBLASTx 421 8.00E-52 JG662725
30 F32 1.16 Lysosomal-associated membrane protein 1-Taeniopygia guttata tBLASTx 591 4.00E-93 JG662726
31 F7 1.14 Serine protease 23-Gallus gallus BLAST 740 3.00E-168 JG662727
32 F18 1.09 Beta-catenin isolate 3-Anas platyrhynchos BLAST 710 0 JG662728
33 F52 1.09 Zebrafish DNA sequence from clone CH211-276C22 in linkage group 6 tBLASTx 218 2.2 JG662729
34 F25 1.08 Gallus gallus finished cDNA, clone ChEST457d18 tBLASTx 696 2.00E-27 JG662730
35 F59 1.07 Leucine proline-enriched proteoglycan (leprecan)1/prolyl 3-hydroxylase 1 (P3H1)-Gallus gallus BLAST 581 0 JG662731
36 F12 1.07 Ribophorin I-Gallus gallus BLAST 796 0 JG662732
37 F87 1.06 Gallus gallus finished cDNA, clone ChEST855m19 BLAST 505 3.00E-91 JG662733
38 F95 1.06 Spastic paraplegia 3A (autosomal dominant)-Gallus gallus BLAST 316 3.00E-54 JG662734
39 F107 1.06 High-mobility group box 3-Taeniopygia guttata BLAST 276 2.00E-136 JG662735
40 F1 1.05 ATP synthase, H+ transporting, mitochondrial F0 complex, subunit F2 (ATP5J2)-Gallus gallus tBLASTx 199 9.00E-18 JG662736
41 F78 1.03 Ubiquitin specific peptidase 47 (USP47)-Gallus gallus BLAST 695 0 JG662737
42 F88 1.03 No significant similarity found tBLASTx 360 - JG662738