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Table 1 Primers used in construction of DNA clones.

From: Functional exchangeability of the nuclear localization signal (NLS) of capsid protein between PCV1 and PCV2 in vitro: Implications for the role of NLS in viral replication

DNA clones

Primer

Primer Sequences (5'-3')c

Primer location

Application

PCV2

Ps1

GCGAATTC AACCTTAACCTTTCTTATTCT

1418-1446 nt

PCV2 genome

DNA clone

Ps2

AAGAATTC TGGCCCTGCTCCC

1407-1427 nt

 
 

a Ps3

GCTCTAGA ATAACAGCACTGGAG

1356-1378 nt

Duplicate

 

a Ps4

GAGGTACC CGTTTTCAGATATGAC

1730-1753 nt

 

PCV1

Pj3

ACGGTACC CGAAGGCCGATTTGAA

914-937 nt

PCV1 genome

DNA clone

Pj4

TAGGTACC TCCGTGGATTGTTCTCC

899-923 nt

 
 

bEcoRV-f12

GCGATATC ATGGAGAAGAAGTTGTTGT

649-675 nt

Duplicate

 

bEcoRI-r12

CCGAATTC TCTTTCACTTTTATAGGATG

1721-1748 nt

 

PCV1-NLS2

ClaI-f

CAATCGAT AACGCCTCCTTGGATACGTCATC

1694-1724 nt

PCV1 ΔNLS

DNA clone

BglII-r

GGAGATCT TCAATTCCCGCCTTTCTAG

1566-1592 nt

 
 

BamH-F

TAGGATCCCCGTGCCATTTTTCCTTC

1594-1619 nt

PCV2 NLS

 

MspI-r

CGTTACCGG AGAAGAAGACAC

1696-1716 nt

 

PCV2-NLS1

BalI-PCV2-F

CCTTGGCCA CGTCATATCTGAA

1720-1741 nt

PCV2 ΔNLS

DNA clone

BamH-PCV2-R

GAAAAATGGGATCC TCAACACC

1594-1615 nt

 
 

BglII-PCV1-F

TACAGATCT TTCGGCGCCA

1588-1606 nt

PCV1 NLS

 

BalI-PCV1-R

TATTGGCCA AGGAGGCGTTA

1701-1720 nt

 
  1. a, Primers also used for amplification of duplicate in PCV2-NLS1 DNA clone construction.
  2. b, Primers also used for amplification of duplicate in PCV1-NLS2 DNA clones construction.
  3. c, The restriction enzyme sites were underlined.