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Table 3 Sequences of primers designed for RT-LAMP assay

From: Visual detection of H3 subtype avian influenza viruses by reverse transcription loop-mediated isothermal amplification assay

Primer name

Sequence(5'-3')a

Genome position

FIP

GGATTATAGTCTGTTGGCTTCTCC-GAATTC-TGTATGTTCAAGCCTCA

658-720

BIP

GGCCAATCTGGCAGAATAAGC-GATATC-CCATTACTATTGATTACCAGTACGT

750-823

F3

CACAAATCAAGAACAAACCA

635-654

B3

CCGAGGAGCGATTAGGTT

825-842

LF

GGTAGAGACTGTGACTCT

678-695

LB

ATCTATTGGACAGTAGTCAAACCTG

771-795

  1. a The restriction enzyme site sequences of EcoR I and EcoR V were added in FIP and BIP primer respectively. Primers of F3, B3 were applied to the RT-PCR assay of H3 subtype AIVs.