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Table 2 Putative ΦCA82 ORFs and amino acid (aa) homologies with members of Microviridae

From: The complete genome sequence and genetic analysis of ΦCA82 a novel uncultured microphage from the turkey gastrointestinal system

ΦCA82 ORF No. of aa Predicted function Homologous protein (GenBank accession #) % amino acid identity (homology)
01 565 major capsid protein SpV4-VP1 (NC_003438) 30.0 (60.0)
    Chp3-VP1 (NC_008355) 27.0 (63.5)
    CPAR39-VP1 (NC_002180) 28.0 (62.2)
    ΦMH2K-VP1 (NC_002643) 26.0 (58.2)
02 234 minor capsid protein Chp3-VP2 (NC_008355) 22.0 (45.6)
    ΦMH2K-VP2 (NC_002643) 17.9 (50.8)
03 353 replication initiation SpV4-rep (NC_003438) 22.6 (54.5)
    ΦMH2K-rep (NC_002643) 17.0 (53.2)
04 71 hypothetical   
05 78 hypothetical   
06 39 hypothetical   
07 80 hypothetical   
08 80 hypothetical   
09 117 hypothetical   
10 52 hypothetical   
  1. a Amino acid identity and homology was determined using ClustalW. Homology was calculated by the sum of identical, strongly similar and weakly similar residues and expressed as percentages of the total.