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Table 1 Oligonucleotides used for amplification of the haemagglutinin and neuraminidase genes of H5N1

From: Genetic drift evolution under vaccination pressure among H5N1 Egyptian isolates

Name

Sense

Primer sequence (5'-3')

Product size

Reference

HA a

For

agcraaagcaggggt

699

 
 

Rev

ctctgrttyagtgttgatgt

 

FLI -Germany*

HA b

For

gagcagaataaaycattttgaga

801

 
 

Rev

tgagtggattctttgtctgcagc

  

HA c

For

acatcaacactraaycagag

716

 
 

Rev

aagtctagagttctctcattyt

  

HA d

For

gctgcagacaaagaatccactca

615

 
 

Rev

gaccagtagaaacaagggtgtttt

  

NA

For

atgaatccaaatcagaag

1345

[13]

 

Rev

tgtcaatggtgaatggcaac

  
  1. *Primer sequences for HA (a-d) were ordered according to information provided by Dr. Sasan R Fereidouni, the Laboratory of Molecular and Biological Characterization of AIV, Friedrich Loeffler Institute, Germany.