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Table 1 Core promoters searched in the neural network and polyadenylation signals predicted by POLYADQ

From: Different linkages in the long and short regions of the genomes of duck enteritis virus Clone-03 and VAC Strains

Gene

Promoter locationa

Promoter score

TATA sequence

TATA location

Poly(A) sequence

Poly(A) location

Poly(A) score

RLORF1

NPb

NP

NP

NP

NP

NP

NP

ORF1

5,564-5,613

0.93

ATATAAAGCGGTAGT

5,575-5,589

NP

NP

NP

ICP4

10,928-10,977rc

0.88

TTTGTAAAAT

10,960-10,969r

AATAAA

5,867-5,872r

0.317475

S1

13,570-13,619r

0.85

CTATCTAAGGCGACC

13,602-13,611r

NP

NP

NP

S2

14,725-14,774

1.00

NP

NP

NP

NP

NP

US1

15,606-15,655

0.99

GCCTAAAAAGCACCG

15,613-15,628

AATAAA

17,015-17,020

0.644949

US10

17,003-17,052r

0.94

CAATAAACACCGCTT

17,014-17,028

NP

NP

NP

SORF3

19,280-19,329r

0.99

GCTTTAAAAG

19,313-19,322r

AATAAAr

18,248-18,253r

0.138679

US2

20,407-20,456r

0.85

GTCTAAAAGGCAGAG

20,434-20,448r

NP

NP

NP

MDV091.5-like

NP

NP

NP

NP

NP

NP

NP

US3

20,299-20,348

0.85

CCCATAAATG

20,305-20,314

NP

NP

NP

US4

21,799-21,848

0.96

GTATAAATTAGACAA

21,807-21,821

AATAAA

23,310-23,315

0.385382

US5

23,335-23,384

0.88

GTCTTGTGTTTATAT

23,335-23,349

AATAAA

25,170-25,175

0.266987

US6

25,058-25,107

0.94

CGGCAATATGTATAT

25,062-25,076

NP

NP

NP

US7

26,158-26,207

0.92

ATATAATTACTACGC

26,167-26,181

NP

NP

NP

US8

NP

NP

NP

NP

NP

NP

NP

ORFx

29,414-29,463

0.93

GTATATTAGGCCGAC

29,421-29,435

NP

NP

NP

US1

31,386-31,435r

0.99

GCCTAAAAAGCACCG

31,413-31,427r

AATAAA

30,021-30,026

0.644949

S2

32,267-32,316r

1.00

NP

NP

NP

NP

NP

S1

33,422-33,471

0.85

CTATCTAAGGCGACC

33,431-33,445

NP

NP

NP

ICP4

36,064-36,113

0.88

TTTGTAAAAT

36,072-36,081

AATAAA

41,170-41,175

0.317475

  1. a the position is according to the sequence of the whole fragment of 42,897 bp.
  2. b NP indicates no prediction.
  3. c r indicates reverse direction.