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Table 1 Core promoters searched in the neural network and polyadenylation signals predicted by POLYADQ

From: Different linkages in the long and short regions of the genomes of duck enteritis virus Clone-03 and VAC Strains

Gene Promoter locationa Promoter score TATA sequence TATA location Poly(A) sequence Poly(A) location Poly(A) score
RLORF1 NPb NP NP NP NP NP NP
ORF1 5,564-5,613 0.93 ATATAAAGCGGTAGT 5,575-5,589 NP NP NP
ICP4 10,928-10,977rc 0.88 TTTGTAAAAT 10,960-10,969r AATAAA 5,867-5,872r 0.317475
S1 13,570-13,619r 0.85 CTATCTAAGGCGACC 13,602-13,611r NP NP NP
S2 14,725-14,774 1.00 NP NP NP NP NP
US1 15,606-15,655 0.99 GCCTAAAAAGCACCG 15,613-15,628 AATAAA 17,015-17,020 0.644949
US10 17,003-17,052r 0.94 CAATAAACACCGCTT 17,014-17,028 NP NP NP
SORF3 19,280-19,329r 0.99 GCTTTAAAAG 19,313-19,322r AATAAAr 18,248-18,253r 0.138679
US2 20,407-20,456r 0.85 GTCTAAAAGGCAGAG 20,434-20,448r NP NP NP
MDV091.5-like NP NP NP NP NP NP NP
US3 20,299-20,348 0.85 CCCATAAATG 20,305-20,314 NP NP NP
US4 21,799-21,848 0.96 GTATAAATTAGACAA 21,807-21,821 AATAAA 23,310-23,315 0.385382
US5 23,335-23,384 0.88 GTCTTGTGTTTATAT 23,335-23,349 AATAAA 25,170-25,175 0.266987
US6 25,058-25,107 0.94 CGGCAATATGTATAT 25,062-25,076 NP NP NP
US7 26,158-26,207 0.92 ATATAATTACTACGC 26,167-26,181 NP NP NP
US8 NP NP NP NP NP NP NP
ORFx 29,414-29,463 0.93 GTATATTAGGCCGAC 29,421-29,435 NP NP NP
US1 31,386-31,435r 0.99 GCCTAAAAAGCACCG 31,413-31,427r AATAAA 30,021-30,026 0.644949
S2 32,267-32,316r 1.00 NP NP NP NP NP
S1 33,422-33,471 0.85 CTATCTAAGGCGACC 33,431-33,445 NP NP NP
ICP4 36,064-36,113 0.88 TTTGTAAAAT 36,072-36,081 AATAAA 41,170-41,175 0.317475
  1. a the position is according to the sequence of the whole fragment of 42,897 bp.
  2. b NP indicates no prediction.
  3. c r indicates reverse direction.
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Virology Journal

ISSN: 1743-422X