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Table 4 Sequence similarities and characterization of of Madine Darby Canine Kidney Cells (MDCK)

From: Cellular transcripts regulated during infections with Highly Pathogenic H5N1 Avian Influenza virus in 3 host systems

Clone Name

Identity

Accession Number

Homology (%)

Putative functional role

DEG 12

Gibberella moniliformis p450-4 gene for ent-kaurene oxidase, exons 1-4, strain A-00149 (up regulated)

AM946177

100%

Responsible for the synthesis of plant terpenoids.

DEG 13

Pongo abelii reticulon 4 (RTN4), mRNA >emb|CR861110.1| Pongo abelii mRNA; cDNA DKFZp459C0314 (from clone DKFZp459C0314) (down regulated)

NM001133403

90%

Protein that in humans is encoded by the RTN4 gene that has been identified as an inhibitor of neurite outgrowth specific to the central nervous system. It is also known to interact with Bcl-2 gene which is involved in promoting and inhibiting apoptosis in cells during stress.

DEG 14

Homo sapiens amyloid beta (A4) precursor protein, mRNA (cDNA clone IMAGE:4126584), (down regulated)

BC018937

94%

Neuronal adaptor protein that interacts with the Alzheimer's disease amyloid precursor protein (APP). It stabilizes APP and inhibits production of proteolytic APP fragments including the A beta peptide that is deposited in the brains of Alzheimer's disease patients

DEG 15

Influenza A virus (A/open-billed stork/Nakhonsawan/BBA0627 May/05(H5N1)) polymerase PA (PA) gene, complete cds (up regulated)

EF112270

99%

Subunit of the trimeric complex of the RN polymerase of Influenza A, involved in tra RNAs

DEG 16

unknown gene (down regulated)

   

DEG 17

PREDICTED: Canis familiaris similar to ribosomal protein L14, transcript variant 2 (LOC480789), mRNA (down regulated)

XM537906

100%

Encodes a ribosomal protein that is a compon Involved in transcription

DEG 18

Tigriopus japonicus mitochondrial heat shock protein 60 (Hsp60) mRNA, complete cds; nuclear gene for mitochondrial product (up regulated)

EU306562

100%

Mitochondrial chaperonin that is typically transportation and refolding of proteins fr mitochondrial matrix. Involved in stre especially during infection.

DEG 19

TPA: TPA_inf: Canis familiaris RTN4-Cw (RTN4) gene, 3' UTR (up regulated)

BK003960

99%

Inhibitor of neurite outgrowth specific to t system.

DEG 20

PREDICTED: Equus caballus similar to cyclin D2 (LOC100051150), mRNA (down regulated)

XM001494152

94%

Belongs to the highly conserved cyclin family, whose members are characterized by a dramatic periodicity in protein abundance through the cell cycle. Cyclins function as regulators of cyclin-dependent kinases. Forms a complex with and functions as a regulatory subunit of CDK4 or CDK6, whose activity is required for cell cycle G1/S transition. Involved in the phosphorylation of tumor suppressor protein Rb

DEG 21

Mouse mRNA for amyloid beta precursor (protease nexin II) (up regulated)

X59379

95%

Up regulated during neuronal differentiati neural injury.

DEG 22

unknown gene (down regulated)

   

DEG 23

Bos taurus reticulon 4 (RTN4), transcript variant 1, mRNA > gb|AY164744.2| Bos taurus RTN4-C (RTN4) mRNA, complete cds (up regulated)

NM001075138

88%

Inhibitor of neurite outgrowth specific to the central nervous system