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Table 2 Primers used in real time PCR assays

From: Cellular transcripts regulated during infections with Highly Pathogenic H5N1 Avian Influenza virus in 3 host systems

Amplification target

Sequence (5' - 3')

RTN4 F

TTACAGATTGCACTGCGTC

RTN4 R

TGTAACTGCACAAATCTACCCT

RTN4 probe

6FAM-GCTGCAGTTGTGCAGCAGGGACTGCA-Iowa Black FQ

L14 F

TCTTCCTTCTCGCCGAAC

L14 R

CATCAACCAAAGCCCTGTT

L14 probe

6FAM-TGGCCGGGTGGCCTACGTCTCCTTT-Iowa Black FQ

Hsp60 F

CATGGTGTGACCGTAGCAA

Hsp60 R

GGCAATAGAGCGTACCAAGA

Hsp60 probe

6FAM-ACGAAGAGGCTGGGGATGGCACCACT-Iowa Black FQ

CCND1 F

CAGAGGAGAACAAACAGATCAT

CCND1 R

AAATGAACTTCACATCTGTGGC

CCND1 probe

6FAM-AGCACGCGCAGACCTTCGTAGCGCT-Iowa Black FQ

CCND2 F

TAAGCTAGCCAGAGTTTTCTCA

CCND2 R

CATGAAATGAATTTGCACCTCG

CCND2 probe

6FAM-TGGGCCCCAAGGAGTCCCACGGAAT-Iowa Black FQ

CCND3 F

AGTCTCCTCCCTTCCCTTT

CCND3 R

AGTAGCGATCCAGGTAGTTC

CCND3 probe

6FAM-AGGAGCAGCGCTGCGAGGAGGAAGT-Iowa Black FQ

IL-8 F

CACTGTGAAAAATTCAGAAATCATTGTTA

IL-8 R

CTTCACCAAATACCTGCACAACCTTC

IL-8 probe

6FAM-AATGGAAACGAGGTCTGCTTAAACCCCAAG-Iowa Black FQ

18s rRNA F

AGCTCGTAGTTGGATTTCTGTTAATAATTTA

18s rRNA R

GCATATGCCTGCTTTAAGCACTCT

18s rRNA probe

6FAM-TTTCTCAAAGTAAAATTTCA-Iowa Black FQ