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Table 1 Primer sequence used in cDNA synthesis and ACPâ„¢-based PCR

From: Cellular transcripts regulated during infections with Highly Pathogenic H5N1 Avian Influenza virus in 3 host systems

Use

Primer name

Sequence

cDNA synthesis primer

dT-ACP1

5'-CTGTGAATGCTGCGACTACGATIIIII (T) 18-3'

Reverse primer

dT-ACP2

5'-CTGTGAATGCTGCGACTACGATIIIII (T) 15-3'

Arbitrary primer

ACP1

5'-GTCTACCAGGCATTCGCTTCATIIIIIGCCATCGACC-3'

(Forward primer)

ACP2

5'-GTCTACCAGGCATTCGCTTCATIIIIIAGGCGATGCC-3'

 

ACP3

5'-GTCTACCAGGCATTCGCTTCATIIIIICCGGAGGATG-3'

 

ACP4

5'-GTCTACCAGGCATTCGCTTCATIIIIIGCTGCTCGCG-3'

 

ACP5

5'-GTCTACCAGGCATTCGCTTCATIIIIIAGTGCGCTCG-3'

 

ACP6

5'-GTCTACCAGGCATTCGCTTCATIIIIIGGCCACATCG-3'

 

ACP7

5'-GTCTACCAGGCATTCGCTTCATIIIIICTGCGGATCG-3'

 

ACP8

5'-GTCTACCAGGCATTCGCTTCATIIIIIGGTCACGGAG-3'

 

ACP9

5'-GTCTACCAGGCATTCGCTTCATIIIIIGATGCCGCTG-3'

 

ACP10

5'-GTCTACCAGGCATTCGCTTCATIIIIITGGTCGTGCC-3'

 

ACP11

5'-GTCTACCAGGCATTCGCTTCATIIIIICTGCAGGACC-3'

 

ACP12

5'-GTCTACCAGGCATTCGCTTCATIIIIIACCGTGGACG-3'

 

ACP13

5'-GTCTACCAGGCATTCGCTTCATIIIIIGCTTCACCGC-3'

 

ACP14

5'-GTCTACCAGGCATTCGCTTCATIIIIIGCAAGTCGGC-3'

 

ACP15

5'-GTCTACCAGGCATTCGCTTCATIIIIICCACCGTGTG-3'

 

ACP16

5'-GTCTACCAGGCATTCGCTTCATIIIIIGTCGACGGTG-3'

 

ACP17

5'-GTCTACCAGGCATTCGCTTCATIIIIICAAGCCCACG-3'

 

ACP18

5'-GTCTACCAGGCATTCGCTTCATIIIIICGGAGCATCC-3'

 

ACP19

5'-GTCTACCAGGCATTCGCTTCATIIIIITCTGCGAGC-3'

 

ACP20

5'-GTCTACCAGGCATTCGCTTCATIIIIIGACGTTGGCG-3'

  1. ACP, annealing control primer; the polydeoxyinosine [poly (dI)] linkers are underlined. In the table, "I" represents deoxyinosine