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Table 1 Primers used to amplify partial and full length genome sequences of begomovirus components.

From: Infectious clones of Tomato leaf curl Palampur virus with a defective DNA B and their pseudo-recombination with Tomato leaf curl New Delhi virus

Primer

Sequence

Expected fragment size (kb)

Target

Component/gene

Begomo1

CCGTGCTGCTGCCCCCATTGTCCGCGTCAC

1.1

DNA A

Begomo2

CTGCCACAACCTGGATTCACGCACAGGG

1.1

DNA A

Begomo3

GTTCCCTGTGCGTGAATCCATGGTTGTGG

1.7

DNA A

Begomo4

TTTTGTGACGCGGACA ATGGGGGCAGCA

1.7

DNA A

Melonfor

GGTACCTAAGGAC CTGGGTTCTG

2.8

DNA A

Melonrev

GGTACCTGGATATGCTAGGTGTTATAG

2.8

DNA A

TLCVB F

GCTAAGCT TCTGCTCGAACATGGATGGAA

2.7

DNA B

TLCVB R

CAGAAGCTTAGCCAGTTGAGGAATAGATG

2.7

DNA B

MLU F

ATACGCGTAAGGAAATCTGTGAAACAC

2.7

DNA B

MLU R

CCTTACGCGTATATTGTTTGGAGATT

2.7

DNA B

Pst F

GCTCTGCAGCATCGTTTGTGAGAGCG

2.7

DNA B

Pst R

CGTCTGCAGAAGTTACCTTGTCATTTCC

2.7

DNA B

MP F

CACCATGGCAATAGGAAATGATGGTATGGG

 

MP

MP R

AAGGATCCTCTTATTTTTTGAATAAATTTGG

 

MP

NSP F

GGCATCGATGGTGTTTCCGTTGCCACAC

 

NSP

NSP R

GGCGTCGACATATCCAATGTAATTAAGAATT

 

NSP