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Table 2 Synthetic oligonucleotides used for qRT-PCR

From: Establishment of persistent infection with foot-and-mouth disease virus in BHK-21 cells

Primers/probes

Oligonucleotide sequences(5'-3')

Nucleotide positions

Gene

Fragment length

FP

ACAAAACACGGACCCGACTT

3977-3996

2B

67 bp

RT

CTTTTACTCCTATGGCCAGTTCCT

4020-4043

  

Probe

HEX-AACCGCCTGGTGTCCGCGTTT-BHQ1

3998-4018

  

FP

GAACACATTCTTTACACCAGGAT

7184-7206

3D

121 bp

RT

CATATCTTTGCCAATCAACATCAG

7281-7304

  

Probe

FAM-ACAACCTACCGCCGAGCCAATTC-TAMRA

7254-7276

  

FP

AAGGCCATCACCATCTTCCA

127-147

GAPDH

87 bp

RT

GCCAGTAGACTCCACAACATAC

192-213

  

Probe

FAM-AGCGAGATCCCACCAACATCAAATGGG-BHQ1

149-175

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