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Table 1 Primers used to amplify the proviral genomic DNA of SCDY1

From: Sequence analysis for the complete proviral genome of subgroup J Avian Leukosis virus associated with hemangioma: a special 11 bp deletion was observed in U3 region of 3'UTR

No.

Name

Sequence(5'----3')

Position corresponding to the genome of HPRS-103

Expected size(bp)

1

A1F

GGCTCTTATGTAACGATG

16-33

614

 

A1R

GGAAATCACCTTTATGACGG

610-629

 

2

A2F

GATGTGATAGTTAGGGAATAGTGG

336-359

1160

 

A2R

CTCTCATTAGATTCGTAACGTC

1474-1495

 

3

A3F

TCACAAGACTGGCTGATACGGT

1376-1397

1098

 

A3R

CCGAAATAATAGTGATGTCCGC

2452-2473

 

4

A4F

TCATTCTGACTAACACTGGGAG

2378-2399

1191

 

A4R

CGCAACTGCTCATAAAAGGG

3548-3568

 

5

A5F

GTAGCAGAACCCAGGATAGC

3447-3466

1376

 

A5R

GTGAAGCAGGACCCATTATC

4803-4822

 

6

A6F

CGTGTCACATCGGTTGCTG

4725-4743

745

 

A6R

CCCTGGGACAACGGAAATA

5451-5469

 

7

A7F

ACTCTAAGAAGAAGCCGCC

5342-5360

1921

 

A7R

CGA TTCGCAAGT TTCATACC

7243-7262

 

8

A8F

GTTTGCCTTGCTTGTCATAG

6855-6874

968

 

A8R

CAGGTGCTCGTAGTTGTCA

7804-782

 

9*

A9F

TTAGGAAGGCAACAGACGG

7644-7662

466

 

A9R

GGGCGACCAGAATCACG

574-591

 
  1. * Primers used to amplify the long terminal repeat (LTR) sequences from circularized viral DNA of SCDY1.