A one-step reverse transcription loop-mediated isothermal amplification for detection and discrimination of infectious bursal disease virus

Table 2 Nucleotide sequences of non-vvIBDVs at the TfiI stie.

Strains/isolates	Accession number	Geographic origin	Phenotype	Nucleotides in the restriction site
Gt	DQ403248	China	Attenuated	G A T T C^Note
HZ2	AF321054	China	Attenuated	. . . . .
JD1	AF321055	China	Attenuated	. . . . .
CJ801bkf	AF006694	China	Attenuated	. . . . .
GZ29112	AF051837	China	Attenuated	. . . . .
NB	AY319768	China	Attenuated	. . . . .
CEF94	AF194428	Netherlands	Attenuated	. . . . .
D78	AF499929	Luxembourg	Attenuated	. . . . .
CT	AJ310185	France	Attenuated	. . . . .
Cu-1 M	AF362771	Germany	Attenuated	. . . . .
P2	X84034	Germany	Attenuated	. . . . .
Edgar T	AY462026	USA	Attenuated	. . . . .
002-73	X03993	Australia	Classical	. . . . .
CU-1	X16107	Germany	Classical	. . . . .
CS-2-35	EF418033	USA	Classical	. . . . .
GA-1	EF418034	USA	Classical	. . . . .
H-30	EF418035	USA	Classical	. . . . .
P3009	AF109154	Taiwan	Classical	. . . . .
A-BH83	DQ187988	Brazil	Classical	. . . . .
STC	D00499	USA	Classical	. . . . .
Cu1	D00867	Germany	Classical	. . . . .
PBG-98	D00868	U. K.	Classical	. . . . .
52/70	D00869	U. K.	Classical	. . . . .
IM	AY029166	USA	Classical	. . . . .
Cu-1 wt	AF362747	Germany	Classical	. . . . .
Lukert	AY918948	USA	Classical	. . . . .
Edgar C	AY918950	USA	Classical	. . . . .
GLS	AY368653	USA	Variant	. . . . .
varient E	AF133904	USA	Variant	. . . . .
23/82	AF362773	U. K.	Serotype II;	. . . . .
OH	M66722	Canada	Serotype II;	. . . . .

^NoteThe TfiI site was ^5'GAWTC^3' W = A or T. Dark dot indicated residue which was identical to the attenuated Gt. There was a TfiI site in non-vvIBDVs.

ISSN: 1743-422X