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Table 2 Summary of Predicted Interactions

From: Structural similarity-based predictions of protein interactions between HIV-1 and Homo sapiens

Prediction Results Summary

 

Before CC filter

After CC filter

Structure Nodes

11

10

HIV-1 Uniprot

49

33

Similar Human Proteins

347

189

Predicted Human Binding Partners

406

137

True Positives

62

31

Total Predictions

2143

502

Percent True Positive

2.89%

6.18%

  1. The number of proteins found as well as interaction predictions made by the method are shown. HIV-1 Structure Nodes refers to the number of HIV-1 proteins represented in Dali, while HIV-1 Uniprot refers to the number of HIV-1 Uniprot accessions present in the predictions. Human proteins and predicted interactions are counted by unique Uniprot accessions.
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Virology Journal

ISSN: 1743-422X