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Table 2 Oligonucleotide primers and probes used in this work

From: Detection of myxoma viruses encoding a defective M135R gene from clinical cases of myxomatosis; possible implications for the role of the M135R protein as a virulence factor

Primers

Sequence (5'-3')

myxE3Lfor

TAACAACCGCCGTAAATGTG

myxE3Lrev

GCAAACCAAAAATCCGTGTAC

MyxM029Lfor

GTTGGTAATTTCATTTCGTACCA

MyxM029Lrev

GGTAAACAATTAATCCGTTGTAA

M135Rfor

CCATACAGAAAGAGATTCAGTTGGA

M135Rrev

GGAGTCTGTATACAGTGATAAATCCTT

M135RXFOR

CCCTCGAGATAAACATGGTGTTTATATTTATTATC

M135RAPAREV

TTGGGCCC TTACAGGACGCCTAAGGATATC

CATBamfor

TAGGATCCGGGATGGAGAAAAAAATCACTGG

CATXSrev

CCGTCGAC TTA CTCGAGCGCCCCGCCCTGCCACTC

M138Lfor

TTAGGAAGATGTCCAGGAATC

M139Rrev

CCGTATTTGTTCGGCAGACC

M153Rfor

GTGTATAGACTGTCGTACCTAC

M154Rrev

ACGGCAATCAACTTCCCGAC

M009Lfor

CAACTGGGATTTCTGCGTAC

M009Lrev

GACGTAATGCGTCGGCGTG

M036Lfor

CAACAGAACGGCAACAATTTATGT

M036Lrev

ACGTGCAGTAACGCCTGTTC

M148Rfor

CGACCATCTGATAATGTATGTC

M148Rrev

ACAGGGATCGAGAGTGAACG

Probe

 

SwinemyxE3LCOMP

6FAM-CTCAACGAATATTGTCAGATTA-MGBNFQ

  1. Added restriction enzyme sites within the primer sequences are underlined and nucleotides corresponding to the initiation and termination codons within the M135R and CAT sequences are indicated by bold italics.