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Table 1 Matrix of pairwise identity percentages between the complete DNA-A nucleotide sequences of the twenty-three isolates of okra-infecting Cotton leaf curl Gezira viru s (CLCuGV) isolates from Burkina Faso and representatives of some begomoviruses infecting okra in Africa.

From: Molecular diversity of Cotton leaf curl Gezira virus isolates and their satellite DNAs associated with okra leaf curl disease in Burkina Faso

  CLCuGV-NE [NE:Sad: NG1:07]* CLCuGV- NE [NE:Sad: AF1:07]* CLCuGV-NE [NE:Sad: NG2:07]* CLCuGV-EG [EG:Cai: Ok]* CLCuGV-SD [SD:Sha: Ok]* CLCuGV- SD [SD:Gez: Si] CLCuGV-SD [SD:Gez: Ok]* CLCuGV-CM [CM:Lys: Ok:08]* OYCrV-[ML:06]* OYCrV-[CM:Njo: Ok:08]* OYCrV-[ML:01: 05]* HoLCrV-[EG:Cai:97] HoLCrV-[EG:Giz]
NE [BF:Tie:Ok1:08]* 96.3 96.8 98.7 93.3 95 94.6 94.8 89.6 72.4 72.6 72.4 84.1 83.9
NE [BF:Tie:Ok2:08]* 96.3 96.8 98.7 93.3 95 94.6 94.8 89.6 72.4 72.4 72.4 84.1 83.9
NE [BF:Kap:Ok1:08]* 97.3 96.8 96.8 94.4 96.1 95.9 96.0 91.4 72.0 72.4 72.0 83.7 83.7
NE [BF:Kap:Ok2:08]* 96.4 96.4 98.8 93.3 94.9 94.6 94.8 89.3 72.2 72.3 72.2 83.9 83.7
NE [BF:Kap:Ok3:08]* 96.8 97.1 96.7 94.4 96.2 95.9 96.0 91.4 72.1 72.6 72.0 84.1 84.1
NE [BF:Kap:Ok4:08]* 96.3 96.8 98.7 93.3 95.0 94.7 94.8 89.6 72.4 72.6 72.4 84 83.8
NE [BF:Kap:Ok5:08]* 96.6 96.2 96.8 94.2 96.1 95.9 96.1 91.2 72 72.3 71.9 83.5 83.5
NE [BF:Kap:Ok6:08]* 95.9 96.2 96.2 94.6 96.2 95.8 96.1 91.5 71.7 72.4 71.7 84.0 84.1
NE [BF:Kap:Ok7:08]* 96.3 96.8 98.6 93.2 95 94.6 94.8 89.6 72.3 72.5 72.3 83.9 83.7
NE [BF:Kap:Ok8:08]* 96.8 96.4 96.7 94.3 96.1 95.9 96.0 91.3 72.0 72.4 71.9 83.8 83.7
NE [BF:Kap:Ok9:08]* 96.3 96.8 98.7 93.3 95.0 94.6 94.8 89.6 72.4 72.6 72.3 83.9 83.8
NE [BF:Kap:Ok10:08]* 95.0 94.8 97.3 93.2 94.8 94.6 94.7 89.3 72.2 72.0 72.2 83.6 83.4
NE [BF:Pô:Ok1:08]* 95.4 95.1 95.9 94.0 95.7 95.4 95.6 90.7 71.9 72.3 71.9 83.4 83.4
NE [BF:Pô:Ok2:08]* 95.3 95.1 95.8 94.0 95.7 95.4 95.6 90.6 71.9 72.3 71.9 83.4 83.4
NE [BF:Pô:Ok3:08]* 96.6 96.5 96.5 94.4 95.9 95.7 95.8 91.1 72 72.3 71.9 83.8 83.8
NE [BF:Pô:Ok4:08]* 96.6 96.5 96.5 94.4 95.9 95.7 95.8 91.1 72 72.3 71.9 83.8 83.8
NE [BF:Pô:Ok5:08]* 96.6 96.5 96.5 94.4 95.9 95.7 95.8 91.1 72 72.3 71.9 83.8 83.8
NE [BF:Pô:Ok6:08]* 96.6 96.5 96.5 94.4 95.9 95.7 95.8 91.1 72 72.3 71.9 83.8 83.8
NE [BF:Pô:Ok7:08]* 96.6 96.5 96.5 94.4 95.9 95.7 95.8 91.1 72 72.3 71.9 83.8 83.8
NE [BF:Kab:Ok1:08]* 96.6 96.5 96.5 94.4 95.9 95.7 95.8 91.1 72 72.3 71.9 83.8 83.8
NE [BF:Kab:Ok2:08]* 96.6 96.5 96.5 94.4 95.9 95.7 95.8 91.1 72 72.3 71.9 83.8 83.8
NE [BF:Baz:Ok:09]* 96.4 96.7 98.8 93.4 95.1 94.7 95 89.6 72.4 72.4 72.4 83.9 83.7
NE [BF:Bam:Ok:09]* 98.7 98.2 95.9 92.4 93.9 93.7 93.8 89.3 72.4 72.7 72.3 84.2 84.0
  1. *Begomovirus DNA-A isolated on Okra (Abelmoshus esculentus) from Burkina Faso
  2. Acronyms: Niger: NE; Burkina Faso: BF; Tiébélé: Tie; Kampala: Kap; Kamboinsé: Kab; Bazéga: Baz; Bama: Bam
  3. Percentages of identity over the 89% taxonomic threshold of begomovirus are presented in bold