Molecular diversity of Cotton leaf curl Gezira virus isolates and their satellite DNAs associated with okra leaf curl disease in Burkina Faso

Tiendrébéogo, Fidèle; Lefeuvre, Pierre; Hoareau, Murielle; Villemot, Julie; Konaté, Gnissa; Traoré, Alfred S; Barro, Nicolas; Traoré, Valentin S; Reynaud, Bernard; Traoré, Oumar; Lett, Jean-Michel

doi:10.1186/1743-422X-7-48

Virology Journal

Table 1 Matrix of pairwise identity percentages between the complete DNA-A nucleotide sequences of the twenty-three isolates of okra-infecting Cotton leaf curl Gezira viru s (CLCuGV) isolates from Burkina Faso and representatives of some begomoviruses infecting okra in Africa.

From: Molecular diversity of Cotton leaf curl Gezira virus isolates and their satellite DNAs associated with okra leaf curl disease in Burkina Faso

	CLCuGV-NE [NE:Sad: NG1:07]*	CLCuGV- NE [NE:Sad: AF1:07]*	CLCuGV-NE [NE:Sad: NG2:07]*	CLCuGV-EG [EG:Cai: Ok]*	CLCuGV-SD [SD:Sha: Ok]*	CLCuGV- SD [SD:Gez: Si]	CLCuGV-SD [SD:Gez: Ok]*	CLCuGV-CM [CM:Lys: Ok:08]*	OYCrV-[ML:06]*	OYCrV-[CM:Njo: Ok:08]*	OYCrV-[ML:01: 05]*	HoLCrV-[EG:Cai:97]	HoLCrV-[EG:Giz]
NE [BF:Tie:Ok1:08]*	96.3	96.8	98.7	93.3	95	94.6	94.8	89.6	72.4	72.6	72.4	84.1	83.9
NE [BF:Tie:Ok2:08]*	96.3	96.8	98.7	93.3	95	94.6	94.8	89.6	72.4	72.4	72.4	84.1	83.9
NE [BF:Kap:Ok1:08]*	97.3	96.8	96.8	94.4	96.1	95.9	96.0	91.4	72.0	72.4	72.0	83.7	83.7
NE [BF:Kap:Ok2:08]*	96.4	96.4	98.8	93.3	94.9	94.6	94.8	89.3	72.2	72.3	72.2	83.9	83.7
NE [BF:Kap:Ok3:08]*	96.8	97.1	96.7	94.4	96.2	95.9	96.0	91.4	72.1	72.6	72.0	84.1	84.1
NE [BF:Kap:Ok4:08]*	96.3	96.8	98.7	93.3	95.0	94.7	94.8	89.6	72.4	72.6	72.4	84	83.8
NE [BF:Kap:Ok5:08]*	96.6	96.2	96.8	94.2	96.1	95.9	96.1	91.2	72	72.3	71.9	83.5	83.5
NE [BF:Kap:Ok6:08]*	95.9	96.2	96.2	94.6	96.2	95.8	96.1	91.5	71.7	72.4	71.7	84.0	84.1
NE [BF:Kap:Ok7:08]*	96.3	96.8	98.6	93.2	95	94.6	94.8	89.6	72.3	72.5	72.3	83.9	83.7
NE [BF:Kap:Ok8:08]*	96.8	96.4	96.7	94.3	96.1	95.9	96.0	91.3	72.0	72.4	71.9	83.8	83.7
NE [BF:Kap:Ok9:08]*	96.3	96.8	98.7	93.3	95.0	94.6	94.8	89.6	72.4	72.6	72.3	83.9	83.8
NE [BF:Kap:Ok10:08]*	95.0	94.8	97.3	93.2	94.8	94.6	94.7	89.3	72.2	72.0	72.2	83.6	83.4
NE [BF:Pô:Ok1:08]*	95.4	95.1	95.9	94.0	95.7	95.4	95.6	90.7	71.9	72.3	71.9	83.4	83.4
NE [BF:Pô:Ok2:08]*	95.3	95.1	95.8	94.0	95.7	95.4	95.6	90.6	71.9	72.3	71.9	83.4	83.4
NE [BF:Pô:Ok3:08]*	96.6	96.5	96.5	94.4	95.9	95.7	95.8	91.1	72	72.3	71.9	83.8	83.8
NE [BF:Pô:Ok4:08]*	96.6	96.5	96.5	94.4	95.9	95.7	95.8	91.1	72	72.3	71.9	83.8	83.8
NE [BF:Pô:Ok5:08]*	96.6	96.5	96.5	94.4	95.9	95.7	95.8	91.1	72	72.3	71.9	83.8	83.8
NE [BF:Pô:Ok6:08]*	96.6	96.5	96.5	94.4	95.9	95.7	95.8	91.1	72	72.3	71.9	83.8	83.8
NE [BF:Pô:Ok7:08]*	96.6	96.5	96.5	94.4	95.9	95.7	95.8	91.1	72	72.3	71.9	83.8	83.8
NE [BF:Kab:Ok1:08]*	96.6	96.5	96.5	94.4	95.9	95.7	95.8	91.1	72	72.3	71.9	83.8	83.8
NE [BF:Kab:Ok2:08]*	96.6	96.5	96.5	94.4	95.9	95.7	95.8	91.1	72	72.3	71.9	83.8	83.8
NE [BF:Baz:Ok:09]*	96.4	96.7	98.8	93.4	95.1	94.7	95	89.6	72.4	72.4	72.4	83.9	83.7
NE [BF:Bam:Ok:09]*	98.7	98.2	95.9	92.4	93.9	93.7	93.8	89.3	72.4	72.7	72.3	84.2	84.0

*Begomovirus DNA-A isolated on Okra (Abelmoshus esculentus) from Burkina Faso
Acronyms: Niger: NE; Burkina Faso: BF; Tiébélé: Tie; Kampala: Kap; Kamboinsé: Kab; Bazéga: Baz; Bama: Bam
Percentages of identity over the 89% taxonomic threshold of begomovirus are presented in bold

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ISSN: 1743-422X

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