Table 2 Pairwise percent of nucleotide identities between the genomic components and amino acid sequence identities of encoded genes from the virus isolate PGL1 with the components and genes of selected other begomoviruses available in the databases.
Begomovirus | Complete sequence (percentage nucleotide sequence identity) | Intergenic region (percentage nucleotide sequence identity) | Gene# (percentage amino acid sequence identity) | |||||
|---|---|---|---|---|---|---|---|---|
| Â | Â | Â | AV2 | CP | REn | TrAP | Rep | AC4 |
ChLCV [11]* | 84.0-87.2 | 77.3-88.3 | 87.9-92.4 | 94.4-98.4 | 75.8-91.7 | 82.6-97.7 | 75.2-91.0 | 39.3-92.9 |
CLCuMV [10]* | 74.0-74.6 | 59.4-63.8 | 63.0-74.1 | 82.3-94.4 | 63.6-76.9 | 57.6-68.2 | 69.8-72.4 | 40.5-46.4 |
EACMV [10]* | 69.6-69.9 | 62.4-64.0 | 62.1-62.9 | 75.4-76.2 | 68.9-70.5 | 63.6-65.2 | 53.6-65.8 | 26.0-27.3 |
PapLCV [5]* | 72.3-87.0 | 61.9-85.9 | 69.1-90.5 | 92.5-97.6 | 73.5-90.9 | 70.5-95.5 | 61.3-91.0 | 40.5-94.0 |
PepLCV [4]* | 74.0-86.7 | 51.7-80.4 | 75.0-91.4 | 78.1-98.0 | 66.7-90.9 | 71.2-91.7 | 69.6-75.8 | 34.5-35.7 |
PepLCBDV [3*] | 88.6-89.4 | 78.7-85.8 | 89.7-92.2 | 94.8-96.0 | 90.2-95.4 | 93.9-97.7 | 90.7-93.5 | 92.9-92.9 |
PepLCLV [2]* | 98.9-99.0 | 96.2-96.7 | 97.4-98.3 | 98.0-98.4 | 99.2-99.2 | 100 | 97.5-98.3 | 97.6-100 |
ToLCNDV [4]* | 71.4-71.8 | 64.8-66.0 | 68.2-70.0 | 92.1-93.3 | 63.6-67.4 | 54.5-56.8 | 67.2-68.6 | 39.7-41.4 |
ToLCGV [7]* | 77.8-78.5 | 73.5-75.1 | 85.0-86.7 | 78.6-78.6 | 79.5-81.8 | 87.9-90.9 | 74.4-75.6 | 34.5-36.9 |