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Table 2 Proteins of the DNA Replication Fork and Protein Database (pdb) reference numbers.

From: Structural analysis of bacteriophage T4 DNA replication: a review in the Virology Journal series on bacteriophage T4 and its relatives

 

T4 and Related Phage

T7 Phage

E. coli

Eukaryotes

Replicative DNA polymerase

gp43 polymerase (pdb 1ig9, 1clq, 1noy, 1ih7)

Gene 5 Polymerase (pdb 1t7p, 1skr, 1t8e, 1x9m)

Pol III (αεθ) (pdb 2hnh, 1ido)

Pol δ (subunits p125, p50, p66, p12) (pdb 3e0j)

Sliding clamp

gp45 protein (pdb 1czd, 1b8h)

E. coli Thioredoxin (pdb 1t7p, 1skr)

β (pdb 2pol)

PCNA (pdb 1plr, 1axc, 1ul1)

Clamp loader

gp44/62 protein

 

γ complex (γδδ'ψχ) (pdb 1jr3, 1jqj, 3glf)

RF-C (subunits p140, p40, p38, p37, p36) (pdb 1sxj)

ssDNA binding protein

gp32 protein (pdb 1gpc)

Gene 2.5 protein (pdb 1je5)

SSB (pdb 1qvc)

RP-A (subunits p14, p32, p70) (pdb 1fgu, 2b29, 1jmc, 1l1o, 2pi2)

Replicative helicase

gp41 helicase

Gene 4 helicase (pdb 1e0j, 1e0k, 1q57)

DnaB (pdb 1b79, 2r6a)

MCM (pdb 3f9v, 1ltl)

helicase assembly protein

gp59 protein (pdb 1c1k)

 

DnaC, PriA (pdb 3ec2)

 

primase

gp61 primase

Gene 4 primase (pdb 1nui, 1q57)

DnaG (pdb 1dd9, 3b39, 2r6c)

Pol α/primase (pdb 3flo)

5' to 3' Exonuclease

RNase H (pdb 1tfr, 2ihn)

 

Pol I N-domain

FEN-1, RNase H1 (pdb 1ul1, 2qk9)

DNA ligase 1

T4 ligase (gp30)

T7 ligase (pdb 1a0i)

DNA ligase (pdb 2owo)

DNA ligase I