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Table 9 Comparison of the lengths of the non-coding regions of ISAV genomic segments between the two ISAV genotypes (see also Figures 6 and 7)

From: Identification of the 3' and 5' terminal sequences of the 8 rna genome segments of european and north american genotypes of infectious salmon anemia virus (an orthomyxovirus) and evidence for quasispecies based on the non-coding sequences of transcripts

ISAV RNA segment cRNA

5' Non-coding region

3' Non-coding region1

 

NBISA012

ADL-ISAV-07

Percent identity

NBISA012

ADL-ISAV-07

Percent identity

Segment 1

8

8

100

89 (15-4)

90* (15-4)

86.5

Segment 2

24

24

100

98 (14-4)

98 (14-4)

99.0

Segment 3

48

48

100

147 (14-4)

147 (14-4)

100

Segment 4

23

22*

91.3

67 (13-5)

67 (13-5)

100

Segment 5

8

8

100

143 (15-3)

143 (15-3)

77.2

Segment 6

7

5*

Not done

131 (14-4)

138* (14-4)

80.0

Segment 7

21

21

100

99 (14-4)

100* (14-4)

87.0

Segment 8

21

21

90.5

145 (13-5)

144* (13-5)

89.0

  1. 1 Numbers in brackets denote # nucleotides to polyadenylation signal, and length of polyadenylation signal.
  2. 2Lengths of non-coding regions deduced from vRNA sequences.
  3. *Deletions/insertions revealed by sequence alignment.