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Table 10 Summary of results of a BLAST search 56 of the GenBank Database 32 for ISAV sequences

From: Identification of the 3' and 5' terminal sequences of the 8 rna genome segments of european and north american genotypes of infectious salmon anemia virus (an orthomyxovirus) and evidence for quasispecies based on the non-coding sequences of transcripts

Genome segment

ISAV isolate, GenBank Acc. No. and reference of published 5' end

ISAV isolate, GenBank Acc. No. and reference of published 3' end2

Segment 1

Bremnes/98, AY168787, [25] [has extra 1 nucleotide]

Bremnes/98, AY168787, [25] [missing terminal 24 nucleotides];

  

CCBB, AF404347, [27] [missing terminal 6 nucleotides];

  

ADL-PM 3205 ISAV-07, Figure 2, this paper [missing terminal 17 nucleotides]

Segment 2

Sotra 92/93, AJ002475, [31] [has extra 12 nucleotides]

Sotra 92/93, AJ002475, [31] [missing terminal 18 nucleotides];

  

Bay of Fundy/97, AF262399, Krossoy, Unpublished 1999 [missing terminal 63 nucleotides];

  

ADL-PM 3205 ISAV-07, Figure 2, this paper [missing terminal 18 nucleotides]

Segment 3

CCBB, AF404345, [27];

CCBB, AF404345, [27] [missing terminal 14 nucleotides];

 

NB isolate, AF306549, [26] [has extra 11 nucleotides]

390/98, AJ276858, [57] [missing terminal 14 nucleotides];

  

ADL-PM 3205 ISAV-07, Figure 2, this paper [missing terminal 18 nucleotides]

Segment 4

NB isolate, AF306548, [26]

CCBB, AF404344, [27] [missing terminal 21 nucleotides];

  

SF83/04, AY744391, Plarre and Nylund, Unpublished 2004 [missing terminal 32 nucleotides];

  

ADL-PM 3205 ISAV-07, Figure 2, this paper [missing terminal 13 nucleotides]

Segment 5

ME/01, AF429986, [27];

ME/01, AF429986, [27];

 

CCBB, AF404343, [27];

CCBB, AF404343, [27];

 

390/98, AF429988, [27];

390/98, AF429988, [27];

 

Norway, AF429987, [27];

Norway, AF429987, [27];

 

[all have extra 1 nucleotide]

[all missing terminal 12 nucleotides];

  

ADL-PM 3205 ISAV-07, Figure 2, this paper [missing terminal 17 nucleotides]

Segment 6

ME/01, AY059402, [27];

CCBB, AF404342, [27];

 

CCBB, AF404342, [27];

Glesvaer, AF220607, [28];

 

Glesvaer, AF220607, [28];

ADL-PM 3205 ISAV-07, Figure 2, this paper [missing terminal 14 nucleotides]

 

Bremnes/98, AF302799, [29]

 

Segment 7

Glesvaer/2/901, [23];

Glesvaer/2/901, [23];

 

NB isolate1, [33];

NB isolate, AF328627, [33];

 

Bremnes/98, AY044132, [30]

ADL-PM 3205 ISAV-07, Figure 2, this paper [missing terminal 16 nucleotides]

Segment 8

Glesvaer/2/90, Y10404, [58] [has extra 9 nucleotides]

Glesvaer/2/90, Y10404, [58] [missing terminal 13 nucleotides];

  

NBISA01, AF315063, Kibenge, Unpublished 2000 [missing terminal 18 nucleotides];

  

ADL-PM 3205 ISAV-07, Figure 2, this paper [missing terminal 17 nucleotides]

  1. 1End sequences not in GenBank Database.
  2. 2Only the longest sequence of each ISAV genotype (European and North American) in the GenBank Database is shown, as all 3' end sequences are incomplete (i.e., do not include 3' terminus) except for genome segments 6 and 7.
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Virology Journal

ISSN: 1743-422X