A neurotropic herpesvirus infecting the gastropod, abalone, shares ancestry with oyster herpesvirus and a herpesvirus associated with the amphioxus genome

Savin, Keith W; Cocks, Benjamin G; Wong, Frank; Sawbridge, Tim; Cogan, Noel; Savage, David; Warner, Simone

doi:10.1186/1743-422X-7-308

Virology Journal

Table 2 Branchiostoma florida e (amphioxus) homologues of OsHV-1 coding sequences

From: A neurotropic herpesvirus infecting the gastropod, abalone, shares ancestry with oyster herpesvirus and a herpesvirus associated with the amphioxus genome

OsHV-1	Branchiostoma floridae		BLASTP result
Accession/ORF	Accession	Location	Ident.	Score	E value
YP_024639.1 ORF100 DNA polymerase	XP_002591163.1 DNA polymerase	55013..60373 no introns	28%	379	e-102
YP_024567.1 ORF22	XP_002591166.1	67372..72375 no introns	24%	128	8e-27
YP_024552.1 YP_024593.1 ORF7, ORF49 family primase-helicase	XP_002591168.1	76325..79696 no introns	24%	122	3e-25
YP_024630.1 ORF91	XP_002591169.1	80230..85225 introns predicted	29%	114	2e-23
YP_024606.1 ORF66 AE_Prim_S_like primase	XP_002591170.1	86185..88995 no introns	24%	239	2e-60
YP_024573.1 ORF28	XP_002591172.1	94244..96667 no introns	22%	107	4e-21
YP_024641.1 ORF102	XP_002591174.1	99529..101919 no introns	20%	78	4e-12
YP_024645.1 ORF107	XP_002591175.1 contains PAT1 domain pfam09770	103007..105292 no introns	24%	65	2e-08
YP_024584.1 ORF40	XP_002591176.1	105441..107045 no introns	29%	180	4e-43
YP_024643.1 ORF104	XP_002591178.1	108452..110641 no introns	19%	101	4e-19
YP_024615.1 ORF76	XP_002591179.1	112401..114281 no introns	26%	71	4e-10
YP_024624.1 ORF85	XP_002591189.1	137878..148379 introns predicted	22%	70	1e-09
YP_024597.1 YP_024608.1 ORF54, ORF68 family membrane glycoprotein	XP_002591190.1 XP_002591197.1 (possible gene family)	148508..150751 174789..176912 no introns	30%	332	1e-88
YP_024591.1 ORF47	XP_002591194.1	163504..167571 no introns	23%	275	4e-71
YP_024647.1 ORF109 terminase	XP_002591195.1 terminase	168081..170354 no introns	31%	308	2e-81
YP_024650.1 ORF112	XP_002591198.1	177489..179961 introns predicted	23%	68	2e-09
YP_024609.1 ORF69	XP_002591200.1	187709..188944 no introns	25%	80	3e-13
YP_024600.1 ORF57	XP_002610653.1 chloride channel	BRAFLscaffold_25 2304811..2311488 introns predicted	30%	86	4e-15

Note: B. floridae OsHV homologue locations are all on scaffold BRAFLscaffold_217, except for OsHV ORF57. All OsHV and B. floridae predicted proteins listed are of unknown function unless stated otherwise. Four B. floridae genes are predicted to contain introns. Also 4 other B. floridae genes in the scaffold BRAFLscaffold_217 between 60 kb and 150 kb encode proteins similar to apoptosis regulators like IAP-3 often present in herpesvirus genomes (not listed and not detected using OsHV sequences).

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ISSN: 1743-422X

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