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Table 1 Percent identity (%) of nucleotide and amino acid sequences in different gene fragment between subgenogroup C2-like and other subgenogroups of enterovirus 71*

From: Genetic diversity and C2-like subgenogroup strains of enterovirus 71, Taiwan, 2008

Sub- genogroup

Gene

  

5'-UTR

VP4

VP2

VP3

VP1

2A

2B

2C

3A

3B

3C

3D

Complete

A

nt

83.1

84.0

80.8-81.1

83.0-83.3

83.8

79.1

76.0

78.3

77.9-78.2

72.7

76.5

76.8

79.3-79.4

 

aa

 

100

97.6

97.9

94.9

96.6

92.9

96.6

97.6

90.9

93.4

91.7

95.3

B1

nt

84.2-84.4

78.7

84.5-84.6

79.6-79.8

83.5-83.7

76.8-78.0

72.3-73.0

82.4-82.5

81.3-81.7

81.8

79.5-80.5

77.7-78.3

80.2-80.6

 

aa

 

98.5-100

97.6

97.5

96.9-97.3

94.0-94.6

91.9-92.9

95.1-95.4

96.5

95.4

96.7

93.2-94.3

95.8-95.9

B2

nt

85.1-85.2

80.1

84.1

80.3-80.5

83.3-83.6

79.1

73.4

82.6

78.6-79.0

80.3

78.5

78.3-78.4

80.3-80.5

 

aa

 

100

97.6

97.1

97.3

94.6

92.9

94.5

97.6

95.4

96.7

93.9-94.1

95.8

B3

nt

84.1-84.6

82.6-83.0

82.4-82.5

79.2-79.6

82.9-83.3

78.8-79.1

76.7

83.4-83.6

83.7-84.4

90.9

85.4-85.6

84.7-85.2

82.4-82.6

 

aa

 

100

97.6-98.0

96.6

96.9

95.3

94.9

97.5-97.8

98.8

95.4

98.3

96.5-97.4

97.0-97.3

B4

nt

83.9-84.5

83.0

83.3-83.4

80.3-80.4

83.3-83.6

80.6

75.0

82.3-82.6

79.0-79.8

83.3

78.6-78.8

78.2-78.5

80.4-80.6

 

aa

 

100

98.0

97.1

97.6

95.3

92.9

96.3

95.3-96.5

100

95.6

94.5-94.8

96.2-96.3

B5

nt

79.8-83.4

82.6-83.5

81.7-82.8

80.9-82.3

83.6-84.5

80.6-81.7

73.0-73.7

82.1-82.8

79.4-81.0

84.8-86.3

77.7-78.1

77.5-78.1

80.3-80.5

 

aa

 

100

97.2-98.0

97.1

97.9-98.3

94.0-95.4

92.9

95.7-96.3

97.6

95.4-100

95.0-96.1

94.1-94.5

96.1-96.3

C1

nt

81.6-82.2

88.4

88.5-88.9

88.2-89.6

88.4-89.0

85.5-86.2

84.8-85.1

79.7-79.9

75.9-77.1

77.2-78.7

75.2-75.5

79.4-79.9

82.4-83.0

 

aa

 

98.5-100

99.2-99.6

99.1-99.5

99.6

96.6-97.3

94.9

96.6-96.9

91.8

95.4

93.4-93.9

94.3-94.5

96.7-96.9

C2

nt

81.2-83.3

91.7-94.6

93.7-94.4

93.8-95.1

91.9-93.0

90.8-92.6

90.9-91.5

78.7-80.4

77.1-79.0

75.7-77.2

73.2-75.0

78.9-80.0

84.0-85.4

 

aa

 

100

99.2-100

100

98.6-99.6

98.6

91.9-93.9

91.1-96.9

87.2-93.0

95.4

87.4-93.9

93.2-94.3

95.1-96.9

C3

nt

83.2-83.5

87.9

90.4-90.5

90.4-91.0

88.1-88.6

86.8-87.1

88.5

78.8-79.0

77.1-77.9

75.7

75.4-75.7

78.5-78.9

82.9-83.2

 

aa

 

100

99.6

100

99.6

96.6-97.3

93.9

97.2

93.0

95.4

92.3-92.8

93.9-94.1

96.8

C4

nt

83.1-84.1

88.4-90.8

88.7-90.6

89.2-90.4

86.1-87.9

82.6-84.0

73.7-75.4

82.4-83.5

80.2-81.3

83.3-86.3

83.0-83.7

81.8-83.6

83.8-84.4

 

aa

 

97.1-100

99.6-100

98.7-99.5

98.6-99.6

95.3-96.0

92.9-94.9

97.2-98.4

97.6-98.8

95.4

96.1-97.2

95.4-96.5

97.4-97.9

C5

nt

82.5-82.9

89.3-90.3

88.0-88.7

87.1-87.4

87.8

86.2-86.8

82.4-83.1

78.3-79.3

74.0-74.8

80.3-81.8

76.3-76.5

77.3-77.4

81.4-82.5

 

aa

 

100

99.6

100

98.6-99.6

96.0

91.9-93.9

97.2

93.0-94.1

95.4

93.4-93.9

93.2-93.9

96.6-96.7

  1. *Subgenogroup A: BrCr-CA-70 (GenBank accession no. U22521), B1: 236-TW86 (FJ357379) and 244-TW86 (FJ357381), B2: 26M/AUS/4/99 (EU364841), B3: SAR/SHA66 (AM396586) and 26M/AUS/4/99 (EU364841), B4: 5865/SIN/000009 (AF316321) and 5666/SIN/002209 (AF352027), B5: S19841-SAR-03 (DQ341363), 2007-08747 (EU527985) and 2009-03531 (HM622390), C1: 804/NO/03 (DQ452074) and 1M-AUS-12-00 (DQ341361), C2: 1245a/98/TW (AF176044), ENT/PM/SHA71 (AM396585), Tainan/5746/98 (AF304457), TW/2086/98 (AF119796) and 6F/AUS/6/99 (DQ381846), C3: 06/KOR/00 (DQ341355) and 03/KOR/00 (DQ341355), C4: 1235/04/TW (DQ133459), BJ08/Z004/3 (FJ606447), 1/SHENZHEN/08 (FJ607334), Shanghai/036/2009 (FJ713137) and SHZH03-CHN (AY465356), C5: E2005125-TW (EF063152) and 2007-07364 (EU527983), C2-like: 2008-00643 (HM622391) and 2008-07776 (HM622392).