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Table 1 Primer sequences used for RNA standard generation, cDNA synthesis and QPCR.

From: Use of a highly sensitive strand-specific quantitative PCR to identify abortive replication in the mouse model of respiratory syncytial virus disease

Primer

Sequence

In vitro standard external positive sense

TCCAGCAAATACACCATCCA

In vitro standard external negative sense

CTGCTTCACCACCCAATTTT

In vitro standard nested positive sense

ATAGAATTC GGTATGTTATATGCGATGTCTAGGT1

In vitro standard nested positive sense

ATAGGATCC TGCTAAGACTCCCCACCGTAA2

Positive sense RNA-specific cDNA synthesis

CGGTCATGGTGGCGAATAA TCCTGCAAAAATCCCTTCAACT3

Negative sense RNA-specific cDNA synthesis

CGGTCATGGTGGCGAATAA ACTTTATAGATGTTTTTGTTCA3

Positive sense-specific QPCR primer

CCCCACTTTATAGATGTTTTTGTTCA

Negative sense-specific QPCR primer

TCCTGCAAAAATCCCTTCAACT

QPCR tag primer

CGGTCATGGTGGCGAATAA

Probe

FAM-TTGGTATAGCACAATCTTCTACCAGAGGTGGC-TAMRA

  1. 1 Sequence contains an EcoRI restriction site (bold, underlined)
  2. 2 Sequence contains a BamHI restriction site (bold, underlined)
  3. 3 Tag sequence is indicted (bold, underlined)