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Table 3 Lineage identification of each gene of H5N1 viruses.

From: Genetic characterization of 2008 reassortant influenza A virus (H5N1), Thailand

Virus

Year

Wave

Lineage identificationa

   

PB2

PB1

PA

HA

NP

NA

M**

NS

A/Chicken/Thailand/CU-K2/04

2004

1

1

1

1

1

1

1

1

1

A/Chicken/Thailand/CU-23/04

2004

2

1

1

1

1

1

1

1

1

A/Chicken/Thailand/NIAH7540/04

2004

2

1.1

1

1

1.2

1.2

1.2

1

1

A/duck/Thailand/NIAH8246/04

2004

2

1.2

1

1

1.2

1.2

1.2

1

1

A/Chicken/Thailand/CK-160/05

2005

3

1.2

1.2

1.2

1.2

1.2

1.2

1

1.2

A/Chicken/Thailand/PC-168/06

2006

4

1.1

1.1

1.1

1.1

1.1

1.1

1.1

1.1

A/Chicken/Thailand/PC-170/06

2006

4

1.2

1.2

1.2

1.2

1.2

1.2

1

1.2

A/Duck/Thailand/CU-329/07

2007

5

1.2

1.2

1.2

1.2

1.2

1.2

1

1.2

A/Chicken/Thailand/ICRC-195/07

2007

5

1.2

1.2

1.1

1.1

1.1

1.2

1.1

1.2

A/Chicken/Thailand/ICRC-213/07

2007

5

1

1.2

1

1

1

1.2

1

1

A/Chicken/Thailand/NS-339/08 *

2008

6

1.2

1.2

1.1

1.1

1.1

1.2

1.1

1.2

A/Chicken/Thailand/PC-340/08 *

2008

6

1.2

1.2

1.1

1.1

1.1

1.2

1.1

1.2

A/Chicken/Thailand/NS-341/08*

2008

6

1.2

1.2

1.1

1.1

1.1

1.2

1.1

1.2

A/Chicken/Thailand/NS-342/08*

2008

6

1.2

1.2

1.1

1.1

1.1

1.2

1.1

1.2

A/Chicken/Thailand/ST- 351/08*

2008

7

1

1

1

1

1

1

1

1

A/Chicken/Thailand/CU-354/08*

2008

7

N/A

1

N/A

1

1

1.2

1

1

A/Chicken/Thailand/NIAH115067/08

2008

7

1.2

1.2

1.1

1.1

1.1

1.2

1.1

1.2

A/Chicken/Thailand/NIAH114843/08

2008

7

1.2

1.2

1.1

1.1

1.1

1.2

1.1

1.2

  1. a Lineage identification is based on the topology of Neighbor joining tree with 1000 replication bootstrapping and Bayesian tree with posterior probability of BMCMC analysis
  2. * The viruses characterized in this study.
  3. ** M gene clusters in only 2 lineages (lineages 1 and 1.1)
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