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Table 2 Pairwise percent amino acid identities of FA28.11.07 proteins with protein sequences in other VHSV isolates.

From: Characterization of a VHS virus genotype III isolated from rainbow trout (Oncorhychus mykiss) at a marine site on the west coast of Norway

   

% Amino acid identitya

 

Isolate code

Country/origin

Genotype

N

P

M

G

NV

L

Accession no.b

DK- Hededam

Denmark

I

92.8

96.8

94.5

96.4

84.4

97.7

Z93412

DE- Fil3

Germany

I- a

93.1

96.4

94.0

96.3

81.1

97.7

NC_000855

FR-14-58

France

I- a

93.6

95.9

94.0

96.3

84.4

97.6

AF143863

FR-07-71

France

I- a

92.6

94.1

94.5

95.3

82.8

83.8c

AJ233396

FR-07-71

France

I- a

-

-

-

-

-

75.9c

AJ009814

UK-96-43

England

I-b

93.1

95.5

95.0

96.3

84.4

97.6

AF143862

DK-M.rhabdo

Baltic Sea

I- b

93.6

95.5

94.5

97.0

90.2

98.6

Z93414

DK-2835

Denmark

I- c

-

-

-

95.9

-

-

AY546585

FI-ka66

Gulf of Bothnia

I- d

-

-

-

96.6

-

-

AY546614

DK-1p52

Baltic Sea

II

-

-

-

94.3

70.5

-

AY546576/DQ159194

DK-1p53

Baltic Sea

II

-

-

-

94.1

70.0

-

AY546577/DQ159195

UK-860/94

Scotland

III

-

-

-

97.4

92.6

-

AY546628/DQ159203

UK-H17/2/95

North Sea

III

-

-

-

99.2

96. 7

-

AY546629/DQ159202

DK-4p168

Skagerrak

III

-

-

-

99.8

-

-

AY546582

UK-MLA98/6PT11

North Sea

III

-

-

-

99.4

-

-

AY546632

DK-4p101

North Sea

III

-

-

-

97.6

-

-

AY546581

UK-H17/5/93

North Sea

III

-

-

-

99.2

-

-

AY546630

JF00Ehi1

Japan

IV- a

92.3

93.7

93.0

92.7

70.5

96.4

AB490792

MI03GL

USA

IV- b

92.1

-

-

94.1

-

-

DQ427105/DQ401193

  1. aThe highest percent amino acid identity observed for each protein is highlighted in bold
  2. bAccession numbers are listed for complete genomes when available, and for the individual nucleotide sequences when not
  3. cGaps in the alignment