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Table 3 Amino acid substitutions in SAV subtype 3 study sequences relative to the reference SAVH20/03 (AY604235)

From: Molecular epidemiology of salmonid alphavirus (SAV) subtype 3 in Norway

Gene/Position

E2/153

E2/185

E2/190

E2/204

E2/206

E2/229

6K/8

nsP3/415

nsP3/425

nsP3/536

E2 length (nt)

Isolate

 

SAVH20/03

K

L

I

R

S

S

I

I

T

S

1103

SAVF07-11(1)

R

*

*

K

P

G

-

-

-

-

451

SAVT09-10(1)

*

M

*

K

P

*

-

-

-

-

451

SAVH07-2(1)

*

*

T

*

*

*

-

-

-

-

451

SAVH07-2(2)

*

*

T

*

*

*

-

-

-

-

451

SAVF08-12(1)

*

*

*

K

P

G

*

*

*

*

1103

SAVF07-11(2)

*

*

*

K

P

G

-

-

-

-

451

SAVH07-3(1)

*

*

*

K

P

G

-

-

-

-

451

SAVH07-3(2)

*

*

*

K

P

G

-

-

-

-

451

SAVT09-10(2)

*

*

*

K

P

*

-

-

-

-

451

SAVH09-3(8)

*

*

*

K

P

*

-

-

-

-

451

SAVH09-3(9)

*

*

*

K

P

*

-

-

-

-

451

SAVH07-3(3)

*

*

*

K

P

*

-

-

-

-

451

SAVH07-3(4)

*

*

*

K

P

*

*

V

A

*

1103

SAVH06-1(1)

*

*

*

*

*

N

-

-

-

-

451

SAVST09-7(1)

*

*

*

*

*

*

T

*

*

*

1103

SAVST09-7(2)

*

*

*

*

*

*

T

*

*

*

1103

SAVST09-7(3)

*

*

*

*

*

*

T

*

*

*

1103

SAVST09-7(4)

*

*

*

*

*

*

T

*

*

*

1103

SAVMR07-5(1)

*

*

*

*

*

*

T

*

*

*

1103

SAVSF06-4(1)

*

*

*

*

*

*

*

*

*

T

1103

  1. Only study sequences showing amino acid substitutions relative to SAVH20/03 has been included, and has been tabulated in the order in which the amino acid substitutions occur.
  2. * amino acid identical to reference SAVH20/03
  3. - sequence not available for the isolate
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Virology Journal

ISSN: 1743-422X