From: Molecular epidemiology of salmonid alphavirus (SAV) subtype 3 in Norway
Isolate identification | Site | Region (Endemic/Non-endemic) | County | Sample month & year | Sample origin | PD outbreak peak mortality (%) | E2 + 6 K (*) or E2 sequence length (nt) | Accession number E2/6 K or E2 | Accession number nsP3 |
---|---|---|---|---|---|---|---|---|---|
SAVH06-1(1) | 1 | Endemic | Hordaland | Sep 2006 | Cohort | 2.6 | 451 | HM208094 | n/a |
SAVH06-1(2) | 1 | Endemic | Hordaland | Sep 2006 | Cohort | 2.6 | 1209* | HM208095 | n/a |
SAVH07-1(3) | 1 | Endemic | Hordaland | Jan 2007 | Cohort | 2.6 | 1209* | HM208096 | n/a |
SAVH07-2(1) | 2 | Endemic | Hordaland | Nov 2007 | Cohort | 26.9 | 451 | HM208097 | n/a |
SAVH07-2(2) | 2 | Endemic | Hordaland | Nov 2007 | Cohort | 26.9 | 451 | HM208098 | n/a |
SAVH07-3(1) | 3 | Endemic | Hordaland | Nov 2007 | Cohort | 12.2 | 451 | HM208099 | n/a |
SAVH07-3(2) | 3 | Endemic | Hordaland | Nov 2007 | Cohort | 12.2 | 451 | HM208100 | n/a |
SAVH07-3(3) | 3 | Endemic | Hordaland | Nov 2007 | Cohort | 12.2 | 451 | HM208101 | n/a |
SAVH07-3(4) | 3 | Endemic | Hordaland | Nov 2007 | Cohort | 12.2 | 1209* | HM208102 | HM208125 |
SAVH07-3(5) | 3 | Endemic | Hordaland | Nov 2007 | Cohort | 12.2 | 451 | HM208103 | n/a |
SAVH09-3(6) | 3 | Endemic | Hordaland | Jul 2009 | Outbreak | n/a | 451 | HM208104 | n/a |
SAVH09-3(7) | 3 | Endemic | Hordaland | Jul 2009 | Outbreak | n/a | 451 | HM208105 | n/a |
SAVH09-3(8) | 3 | Endemic | Hordaland | Jul 2009 | Outbreak | n/a | 451 | HM208106 | n/a |
SAVH09-3(9) | 3 | Endemic | Hordaland | Jul 2009 | Outbreak | n/a | 451 | HM208107 | n/a |
SAVSF06-4(1) | 4 | Endemic | Sogn og Fjordane | Aug 2006 | Cohort | 5.2 | 1209* | HM208114 | HM208129 |
SAVSF07-4(2) | 4 | Endemic | Sogn og Fjordane | Apr 2007 | Cohort | 5.2 | 1170* | HM208115 | n/a |
SAVSF07-4(3) | 4 | Endemic | Sogn og Fjordane | Oct 2007 | Cohort | 5.2 | 1209* | HM208116 | n/a |
SAVSF07-4(4) | 4 | Endemic | Sogn og Fjordane | Oct 2007 | Cohort | 5.2 | 1209* | HM208117 | n/a |
SAVMR07-5(1) | 5 | Endemic | Møre og Romsdal | Jan 2007 | Cohort | 0.7 | 1209* | HM208108 | HM208126 |
SAVMR07-5(2) | 5 | Endemic | Møre og Romsdal | Jan 2007 | Cohort | 0.7 | 451 | HM208109 | n/a |
SAVMR07-6(1) | 6 | Endemic | Møre og Romsdal | Feb 2007 | Cohort | 11.5 | 1209* | HM208110 | HM208127 |
SAVMR07-6(2) | 6 | Endemic | Møre og Romsdal | Nov 2007 | Cohort | 11.5 | 1203* | HM208111 | n/a |
SAVST09-7(1) | 7 | Non-end | Sør Trøndelag | Apr 2009 | Outbreak | n/a | 1209* | HM208118 | n/a |
SAVST09-7(2) | 7 | Non-end | Sør Trøndelag | Apr 2009 | Outbreak | n/a | 1209* | HM208119 | n/a |
SAVST09-7(3) | 7 | Non-end | Sør Trøndelag | Apr 2009 | Outbreak | n/a | 1209* | HM208120 | n/a |
SAVST09-7(4) | 7 | Non-end | Sør Trøndelag | Apr 2009 | Outbreak | n/a | 1209* | HM208121 | n/a |
SAVN03-8(1) | 8 | Non-end | Nordland | Dec 2003 | Outbreak | n/a | 1103 | HM208112 | HM208128 |
SAVN08-9(1) | 9 | Non-end | Nordland | Jul 2008 | Outbreak | n/a | 451 | HM208113 | n/a |
SAVT09-10(1) | 10 | Non-end | Troms | Oct 2009 | Outbreak | n/a | 451 | HM208122 | n/a |
SAVT09-10(2) | 10 | Non-end | Troms | Oct 2009 | Outbreak | n/a | 451 | HM208123 | n/a |
SAVF07-11(1) | 11 | Endemic1 | Finnmark | Nov 2007 | Outbreak | n/a | 451 | HM208091 | n/a |
SAVF07-11(2) | 11 | Endemic1 | Finnmark | Nov 2007 | Outbreak | n/a | 451 | HM208092 | n/a |
SAVF08-12(1) | 12 | Endemic1 | Finnmark | Jan 2008 | Outbreak | n/a | 1209* | HM208093 | HM208124 |