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Table 1 Isolate identification, accession numbers and additional data for 33 SAV 3 study isolates

From: Molecular epidemiology of salmonid alphavirus (SAV) subtype 3 in Norway

Isolate identification

Site

Region (Endemic/Non-endemic)

County

Sample month & year

Sample origin

PD outbreak peak mortality (%)

E2 + 6 K (*) or E2 sequence length (nt)

Accession number E2/6 K or E2

Accession number nsP3

SAVH06-1(1)

1

Endemic

Hordaland

Sep 2006

Cohort

2.6

451

HM208094

n/a

SAVH06-1(2)

1

Endemic

Hordaland

Sep 2006

Cohort

2.6

1209*

HM208095

n/a

SAVH07-1(3)

1

Endemic

Hordaland

Jan 2007

Cohort

2.6

1209*

HM208096

n/a

SAVH07-2(1)

2

Endemic

Hordaland

Nov 2007

Cohort

26.9

451

HM208097

n/a

SAVH07-2(2)

2

Endemic

Hordaland

Nov 2007

Cohort

26.9

451

HM208098

n/a

SAVH07-3(1)

3

Endemic

Hordaland

Nov 2007

Cohort

12.2

451

HM208099

n/a

SAVH07-3(2)

3

Endemic

Hordaland

Nov 2007

Cohort

12.2

451

HM208100

n/a

SAVH07-3(3)

3

Endemic

Hordaland

Nov 2007

Cohort

12.2

451

HM208101

n/a

SAVH07-3(4)

3

Endemic

Hordaland

Nov 2007

Cohort

12.2

1209*

HM208102

HM208125

SAVH07-3(5)

3

Endemic

Hordaland

Nov 2007

Cohort

12.2

451

HM208103

n/a

SAVH09-3(6)

3

Endemic

Hordaland

Jul 2009

Outbreak

n/a

451

HM208104

n/a

SAVH09-3(7)

3

Endemic

Hordaland

Jul 2009

Outbreak

n/a

451

HM208105

n/a

SAVH09-3(8)

3

Endemic

Hordaland

Jul 2009

Outbreak

n/a

451

HM208106

n/a

SAVH09-3(9)

3

Endemic

Hordaland

Jul 2009

Outbreak

n/a

451

HM208107

n/a

SAVSF06-4(1)

4

Endemic

Sogn og Fjordane

Aug 2006

Cohort

5.2

1209*

HM208114

HM208129

SAVSF07-4(2)

4

Endemic

Sogn og Fjordane

Apr 2007

Cohort

5.2

1170*

HM208115

n/a

SAVSF07-4(3)

4

Endemic

Sogn og Fjordane

Oct 2007

Cohort

5.2

1209*

HM208116

n/a

SAVSF07-4(4)

4

Endemic

Sogn og Fjordane

Oct 2007

Cohort

5.2

1209*

HM208117

n/a

SAVMR07-5(1)

5

Endemic

Møre og Romsdal

Jan 2007

Cohort

0.7

1209*

HM208108

HM208126

SAVMR07-5(2)

5

Endemic

Møre og Romsdal

Jan 2007

Cohort

0.7

451

HM208109

n/a

SAVMR07-6(1)

6

Endemic

Møre og Romsdal

Feb 2007

Cohort

11.5

1209*

HM208110

HM208127

SAVMR07-6(2)

6

Endemic

Møre og Romsdal

Nov 2007

Cohort

11.5

1203*

HM208111

n/a

SAVST09-7(1)

7

Non-end

Sør Trøndelag

Apr 2009

Outbreak

n/a

1209*

HM208118

n/a

SAVST09-7(2)

7

Non-end

Sør Trøndelag

Apr 2009

Outbreak

n/a

1209*

HM208119

n/a

SAVST09-7(3)

7

Non-end

Sør Trøndelag

Apr 2009

Outbreak

n/a

1209*

HM208120

n/a

SAVST09-7(4)

7

Non-end

Sør Trøndelag

Apr 2009

Outbreak

n/a

1209*

HM208121

n/a

SAVN03-8(1)

8

Non-end

Nordland

Dec 2003

Outbreak

n/a

1103

HM208112

HM208128

SAVN08-9(1)

9

Non-end

Nordland

Jul 2008

Outbreak

n/a

451

HM208113

n/a

SAVT09-10(1)

10

Non-end

Troms

Oct 2009

Outbreak

n/a

451

HM208122

n/a

SAVT09-10(2)

10

Non-end

Troms

Oct 2009

Outbreak

n/a

451

HM208123

n/a

SAVF07-11(1)

11

Endemic1

Finnmark

Nov 2007

Outbreak

n/a

451

HM208091

n/a

SAVF07-11(2)

11

Endemic1

Finnmark

Nov 2007

Outbreak

n/a

451

HM208092

n/a

SAVF08-12(1)

12

Endemic1

Finnmark

Jan 2008

Outbreak

n/a

1209*

HM208093

HM208124

  1. Isolate identification has been generated as follows: SAV, initial(s) of the originating county, year of sampling - site number (isolate number for site).
  2. * sequence includes partial 6 K sequence
  3. n/a not available
  4. 1 constitutes a separate endemic area with repeated outbreaks in the north of the non-endemic area