Table 1 Influenza A isolates from human, swine and avian hosts used in this study.
From: Genetic variations of nucleoprotein gene of influenza A viruses isolated from swine in Thailand
Virus | Subtype | Year | GenBank # | Lineage |
|---|---|---|---|---|
Equine virus | Â | Â | Â | Â |
A/Equine/Prague/1/56 | H7N7 | 1956 | M63648 | Â |
Avian virus | Â | Â | Â | Â |
A/Chicken//Thailand/CU-K2/04 | H5N1 | 2004 | AY590579 | Avian |
A/Duck/Thailand/71.1/04 | H5N1 | 2004 | AY651496 | Avian |
A/Goose/Thailand/79/04 | H5N1 | 2004 | AY651497 | Avian |
A/Chicken/Thailand/CU-23/04 | H5N1 | 2004 | AY770996 | Avian |
A/Chicken/Thailand/73/04 | H5N1 | 2004 | DQ076203 | Avian |
A/Chicken/Thailand/CK-160/05 | H5N1 | 2005 | DQ334761 | Avian |
A/Quail/Thailand/QA-161/05 | H5N1 | 2005 | DQ334769 | Avian |
A/Chicken/Thailand/CK-162/05 | H5N1 | 2005 | DQ334777 | Avian |
A/Chicken/Thailand/NIAH108192/05 | H5N1 | 2005 | AB450586 | Avian |
A/Chicken/Thailand/PC-170/06 | H5N1 | 2006 | DQ999891 | Avian |
A/Chicken/Thailand/PC-168/06 | H5N1 | 2006 | DQ999883 | Avian |
A/Chicken/Thailand/NP-172/06 | H5N1 | 2006 | DQ999877 | Avian |
A/Watercock/Thailand/CU-334/06 | H5N1 | 2006 | EU616887 | Avian |
A/Quail/Thailand/CU-330/06 | H5N1 | 2006 | EU616855 | Avian |
A/Duck/Thailand/KU-56/07 | H5N1 | 2007 | EU221252 | Avian |
A/Duck/Thailand/CU-328/07 | H5N1 | 2007 | EU616839 | Avian |
A/Duck/Thailand/CU-329/07 | H5N1 | 2007 | EU616847 | Avian |
A/Chicken/Thailand/NS-341/08 | H5N1 | 2008 | EU850417 | Avian |
A/Chicken/Thailand/NS-342/08 | H5N1 | 2008 | EU850425 | Avian |
A/Chicken/Thailand/NS-339/08 | H5N1 | 2008 | EU620657 | Avian |
A/Chicken/Thailand/PC-340/08 | H5N1 | 2008 | EU620665 | Avian |
A/Chicken/Thailand/ST-351/08 | H5N1 | 2008 | FJ868015 | Avian |
A/Chicken/Thailand/CU-354/08 | H5N1 | 2008 | CY047458 | Avian |
A/Chicken/Thailand/CU-355/08 | H5N1 | 2008 | CY047462 | Avian |
A/Duck/Thailand/AY-354/08 | H3N2 | 2008 | FJ802402 | Avian |
Human virus | Â | Â | Â | Â |
A/Thailand/5-KK-494/04 | H5N1 | 2004 | AY627889 | Avian |
A/Thailand/2-SP-33/04 | H5N1 | 2004 | AY627895 | Avian |
A/Thailand/1-KAN-1/04 | H5N1 | 2004 | AY626145 | Avian |
A/Thailand/676/05 | H5N1 | 2005 | DQ360840 | Avian |
A/Thailand/NK165/05 | H5N1 | 2005 | DQ372594 | Avian |
A/Thailand/CU23/06 | Seasonal H3N2 | 2006 | FJ912940 | Human |
A/Thailand/CU32/06 | Seasonal H1N1 | 2006 | FJ912910 | Human |
A/Thailand/CU46/06 | Seasonal H3N2 | 2006 | FJ912922 | Human |
A/Thailand/CU51/06 | Seasonal H1N1 | 2006 | FJ912928 | Human |
A/Thailand/NBL1/06 | H5N1 | 2006 | GQ466183 | Avian |
A/Thailand/CU280/07 | Seasonal H3N2 | 2007 | FJ912964 | Human |
A/Thailand/CU282/07 | Seasonal H3N2 | 2007 | FJ912970 | Human |
A/Thailand/CU356/08 | Seasonal H3N2 | 2008 | FJ912977 | Human |
A/Thailand/CU370/08 | Seasonal H3N2 | 2008 | FJ912985 | Human |
A/Thailand/CU1103/08 | Seasonal H3N2 | 2008 | FJ913012 | Human |
A/Thailand/CU-B4/09 | Seasonal H3N2 | 2009 | GQ902794 | Human |
A/Thailand/CU-B42/09 | Seasonal H1N1 | 2009 | GQ902802 | Human |
A/Thailand/102/09 | Pandemic H1N1 | 2009 | GQ166232 | Classical swine |
A/Thailand/104/09 | Pandemic H1N1 | 2009 | GQ169385 | Classical swine |
A/Thailand/CU-B5/09 | Pandemic H1N1 | 2009 | GQ866952 | Classical swine |
A/Thailand/CU-H9/09 | Pandemic H1N1 | 2009 | GQ866960 | Classical swine |
A/Thailand/CU-H106/09 | Pandemic H1N1 | 2009 | GQ866932 | Classical swine |
A/Thailand/CU-H276/09 | Pandemic H1N1 | 2009 | GQ866933 | Classical swine |
A/Thailand/CU-H340/09 | Pandemic H1N1 | 2009 | GQ866934 | Classical swine |
A/Thailand/CU-B938/09 | Pandemic H1N1 | 2009 | GQ866935 | Classical swine |
Swine influenza virus | Â | Â | Â | Â |
A/Swine/Thailand/KU5.1/04 | H3N2 | 2004 | FJ561061 | Classical swine |
A/Swine/Thailand/NIAH1481/00 | H1N1 | 2000 | AB434289 | Eurasian swine |
A/Swine/Thailand/NIAH550/03 | H1N1 | 2003 | AB434297 | Eurasian swine |
A/Swine/Thailand/NIAH9469/04 | H1N1 | 2004 | AB434305 | Eurasian swine |
A/Swine/Thailand/NIAH977/04 | H1N1 | 2004 | AB434313 | Eurasian swine |
A/Swine/Thailand/NIAH589/05 | H1N1 | 2005 | AB434321 | Eurasian swine |
A/Swine/Thailand/NIAH587/05 | H1N1 | 2005 | AB434329 | Eurasian swine |
A/Swine/Thailand/NIAH13021/05 | H1N2 | 2005 | AB434337 | Eurasian swine |
A/Swine/Thailand/NIAH-NW/03 | H3N2 | 2003 | AB434345 | Classical swine |
A/Swine/Thailand/NIAH464/04 | H3N2 | 2003 | AB434353 | Eurasian swine |
A/Swine/Thailand/NIAH586-1/05 | H3N2 | 2005 | AB434361 | Classical swine |
A/Swine/Thailand/NIAH59/04 | H3N2 | 2004 | AB434369 | Eurasian swine |
A/Swine/Thailand/NIAH874/05 | H3N2 | 2005 | AB434377 | Classical swine |
A/Swine/Thailand/NIAH101942/08 | H1N1 | 2008 | AB514939 | Eurasian swine |
Swine virus characterized in this study | Â | Â | Â | Â |
A/Swine/Thailand/CB-HF6/05 | H1N1 | 2005 | HM142750 | Eurasian swine |
A/Swine/Thailand/06CB2/06 | H1N1 | 2006 | HM142751 | Eurasian swine |
A/Swine/Thailand/CU-CB1/06 | H1N1 | 2006 | HM142752 | Eurasian swine |
A/Swine/Thailand/CS-K1/08 | H1N1 | 2008 | HM142753 | Eurasian swine |
A/Swine/Thailand/CU-CBP18/09 | H1N1 | 2009 | HM142754 | Eurasian swine |
A/Swine/Thailand/CU-CHL2/09 | H1N2 | 2009 | HM142755 | Eurasian swine |
A/Swine/Thailand/CB-NIAH586/05 | H3N2 | 2005 | HM142746 | Classical swine |
A/Swine/Thailand/NP-NIAH586-2/05 | H3N2 | 2005 | HM142747 | Classical swine |
A/Swine/Thailand/CS-NIAH586-3/05 | H3N2 | 2005 | HM142748 | Classical swine |
A/Swine/Thailand/NIAH586-4/05 | H3N2 | 2005 | HM142749 | Classical swine |
A/Swine/Thailand/CB-S1/05 | H3N2 | 2005 | HM142756 | Eurasian swine |
A/Swine/Thailand/CU-CB8.4/07 | H3N2 | 2007 | HM142757 | Eurasian swine |