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Table 5 Deduced HN protein amino acid sequence and C-terminus extension lengths of Malaysian NDV isolates.

From: Molecular characterization of partial fusion gene and C-terminus extension length of haemagglutinin-neuraminidase gene of recently isolated Newcastle disease virus isolates in Malaysia

NDV isolate

Deduced amino acid sequence

C-terminus amino acid extension length**

HN***

Accession No.

MB061/06

KDDGVREARSG*

6

577

GQ922495

MB043/06

KDNRA*

0

571

GQ922500

MB016/07

KDDRV*

0

571

GQ922498

MB064/05

KDDRV*

0

571

GQ922497

MB076/05

KDDRV*

0

571

GQ922496

MB047/05

KDDRV*

0

571

GQ922499

MB091/05

KDDRV*

0

571

GQ922501

MB093/05

KDDRV*

0

571

GQ922502

MB095/05

KDDRV*

0

571

GQ922503

MB128/04

KDDRV*

0

571

GQ922504

MB085/05

KDDRLQEVRSGRLSQP*

11

581

GQ922505

  1. *Indicates the stop codon
  2. **No C-terminus amino acid extension length was detected in all the isolates except for MB061/06 and MB085/05 with 6 and 11 amino acid extension lengths, respectively.
  3. ***Predicted length of the HN protein in number of amino acids based on ORF analysis of the gene nucleotide sequence.
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Virology Journal

ISSN: 1743-422X