Molecular characterization of partial fusion gene and C-terminus extension length of haemagglutinin-neuraminidase gene of recently isolated Newcastle disease virus isolates in Malaysia

Table 2 Amino acid residue substitution of F gene for NDV strains of different genotypes.

Isolate/genotype/subgenotype	11	12	13	14	16	17	18	19	20	22	25	26	28	29	30	36
Consensus	V	P	L	M	I	T	R	I	M	I	C	I	L	T	S	P
MB061/06II	A	.	M	.	T	I	.	V	A	V	.	.	P	A	N	.
MB043/06VII	T	.	P	.	.	.	.	.	.	.	F	.	.	A	.	.
MB016/07 VII	A	.	.	.	.	I	.	.	.	.	Y	V	.	.	.	.
MB064/05VII	A	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
MB076/05VII	.	.	.	I	T	.	.	.	.	.	.	.	.	.	.	S
MB047/05VII	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
MB091/05 VII	T	S	P	.	.	.	Q	.	.	.	F	.	.	A	.	.
MB093/05 VII	T	S	P	.	.	.	Q	.	.	.	F	.	.	A	.	.
MB095/05 VII	T	S	P	.	.	.	Q	.	.	.	F	.	.	A	.	.
MB128/04 VII	T	S	P	.	.	.	Q	.	.	.	F	.	.	A	.	.
MB085/05 VIII	T	.	.	.	.	.	.	.	T	.	.	.	.	.	.	.
AF2240 VIII	T	.	.	.	.	.	.	.	T	.	.	.	P	.	.	.
QH-1/79 VIII	T	.	S	.	.	.	.	.	.	.	.	.	.	.	G	.
QH-4/85VIII	T	.	S	.	.	.	.	.	.	.	.	.	.	.	G	.
V4 Queensland I	.	.	.	.	T	V	.	V	.	A	.	V	P	.	.	.
Ulster/67 I	.	.	.	.	T	V	.	V	A	E	.	V	P	.	.	.
LaSota II	A	.	M	T	T	I	.	V	A	V	.	.	P	A	N	.
Miyadera III	A	.	.	.	T	I	W	.	A	A	.	V	.	.	.	.
Herts/33 IV	A	.	P	.	.	I	.	.	V	T	.	.	.	.	.	.
Italien IV	.	.	.	.	.	I	.	.	A	T	.	.	.	.	.	.
CA1085/71 V	.	.	.	.	.	.	.	.	T	.	.	.	.	.	.	.
H-10/72 V	.	.	.	.	.	.	.	.	T	.	.	.	.	.	.	.
Iraq AG68 VI	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Lebanon -70 VI	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
TX3503/04 VI	A	.	.	.	.	.	.	.	T	.	.	.	.	.	.	.
NDV05-027VI	A	.	.	.	.	.	.	.	T	V	.	.	.	.	.	.
Q-GB 506/97VI	P	.	.	.	.	.	.	.	V	.	S	V	.	.	.	.
DK-1/95VI	.	.	P	.	.	.	.	.	T	.	.	.	.		.	.
DE 143/95VII	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Cockatoo/14698/90VII	.	.	.	.	.	.	.	.	.	.	.	.	S	.	.	.
ZA360/95VII	.	.	.	.	.	.	.	V	.	.	.	.	.	.	G	.
ZW 3422/95VII	.	.	.	.	.	.	.	V	.	.	.	.	.	.	G	.
NDV05-055 VII	A	.	.	I	.	.	.	.	.		.	.	.	A	.	.
Ch/2000VII	A	.	.	.	.	.	.	.	.	.	.	.	P	.	.	.
TW/2000 VII	A	.	.	T	.	.	.	.	.	.	.	.	.	.	.	.
TW/95-1VII	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
ZhJ-1/85	A	.	.	.	T	A	.	.	A	A	.	V	.	.	N	.
FJ-1/85	A	.	.	.	T	V	.	.	A	A	.	V	.	.	N	.

Genetic identity with consensus sequence is marked by dot (.).The bolded residues were residues discussed in the text.

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