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Figure 2 | Virology Journal

Figure 2

From: Evidence for a novel coding sequence overlapping the 5'-terminal ~90 codons of the Gill-associated and Yellow head okavirus envelope glycoprotein gene

Figure 2

Nucleotide and amino acid sequence alignments. (A) Nucleotide alignment of the 5'-terminal region of the ORF3 sgRNA. All currently available and non-identical okavirus sequences with coverage of this region are shown. A further four sequences (DQ978360, FJ194949, FJ848673 and EF156405) are locally identical to EU487200. Genotype designations within the Yellow head complex are based on the ORF3 phylogeny of Ref. [18]. Spaces separate +0/ORF3-frame codons. All AUG codons are indicated in capitals. Colour coding is as follows: light blue - ORF3 initiation codon(s); green - proposed +2/ORFX-frame initiation codon; dark blue - upstream +1 frame AUG codon (31 codon ORF); orange - last upstream ORFX-frame stop codons. (B) Amino acid alignment of the translated ORFX for representative okavirus sequences.

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