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Table 3 Percentages of nucleotide sequence identity of Ch-sw-sav1 with other caliciviruses in regions aligned for phylogeny

From: Molecular characterization and phylogenetic analysis of the complete genome of a porcine sapovirus from Chinese swine

Strain

Genogroupe

GenBank accession no.

% Identity

Hu/Lyon/30338/98/F

GI

AJ251991

47.7

Sapporo virus-Manchester

GI

X86560

42.7

Sapporo virus-Houston/86

GI

U95643

48.5

Hu/Ehime/2K-814/2000

GI

AJ606698

40.3

Hu/Potsdam/2000/DEU

GI

AF294739

57.1

Hu/Mex14917/2000

GI

AF435813

40.4

Hu/Hou7-1181

GIV

AF435814

50.3

Hu/Ehime/99-1596/1999/JP

GIV

AJ606697

45.5

Hu/Ehime/01-1669/2001

GV

AJ606699

43.8

Hu/Arg39/1995/ARG

GV

AY289803

42.1

pig/43/06-18p3/06/ITA

GVIII?

EU221477

29.0

Hu/Chiba/991172/1999

GII

AJ606691

40.0

Hu/cruise ship/2000/USA

GII

AY289804

22.9

Hu/Bristol/1998/UK

GII

AJ249939

43.2

Sapporo virus-London/29845

GII

U95645

47.2

Po/SaV/Giessen-08/2003/DE

GIII

EU122248

88.4

Po/SaV/Giessen-07/2004/DE

GIII

EU122246

86.1

swine/YiY1/2006/PRC

GIII

EU381231

84.2

Porcine sapovirus/Venezuelan

GIII

DQ056363

86.1

swine/OH-JJ259/00/US

GIII

AY826423

86.1

Porcine enteric sapovirus/Japan

GIII

AB242875

84.5

swine/OH-MM280/03/US

GIII

AY823308

82.2

swine/NC-QW270/03/US

GIII

AY826426

86.7

PEC/swine-Id3/2005/HUN

GIII

DQ383274

91.2

Porcine enteric sapovirus/K8/JP

GVI

AB242873

20.2

Po/2053P4/Brazil

GVI

DQ359100

18.6

Po/OH-JJ681/2000/US

GVI

AY974192

28.3

Po/2014P2/Brazil

GVI

DQ359099

16.3

Po/OH-LL26/2002/US

GVII

AY974195

29.2

Porcine enteric sapovirus/K7/JP

GVII

AB221130

18.4